Cynara cardunculus var. scolymus (artichoke): 112517918
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Entry
112517918 CDS
T05604
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112517918
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112517918
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
112517918
NCBI-ProteinID:
XP_024981107
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Position
LG 9:complement(15971506..15980845)
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AA seq
440 aa
AA seq
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MAVSLRLFALCLLLGFMVFVSVNAVSSVEEKNVLQSLIDNSTMADRRNEDIAIEKNDSAV
DEDPERVASMVDMNIRNSTERRKLGFLSCGTGNPIDDCWRCDRNWQRHRKRLADCAIGFG
RNAIGGRDGRYYVVTDPNDDNPVHPRPGTLRHAVIQDQPLWIIFKRDMVITLKQELIMNS
FKTIDARGVNVHIANGGCITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADG
DGISIFGSSHIWVDHNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVMLLGHSDTYDRD
KIMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLA
PVNPNAKEVTHRVQTTGRWRHWNWRSEGDLMLNGAFFVPSGTGAGASYARASSLSAKPSS
VVASLTSGSGALVCRRGRQC
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctctctgagacttttcgcgctctgtttattgctgggttttatggttttcgtt
tccgtcaatgccgtttcaagcgtagaagagaaaaatgtgttgcagagcttaatagacaac
tcaacaatggcggacaggagaaatgaagacattgctattgaaaagaatgacagtgctgtt
gacgaggatccagaaagggttgcttccatggttgacatgaacattcgcaatagcacagaa
agaaggaaattaggatttttgtcatgtggcacggggaacccaatcgacgattgctggcgt
tgcgataggaactggcagcgccaccgcaagcgccttgcagattgcgcgatcgggttcggt
cgcaatgctattggtggccgggatggacggtactatgttgttactgaccccaacgacgac
aaccctgtacacccacgaccaggaactctacgacatgccgtcatccaagatcaacctcta
tggatcatcttcaaaagagacatggttatcaccctaaaacaagaactaatcatgaacagt
ttcaaaacaatcgatgctcgtggagtcaacgttcatatcgcaaacggcggttgcatcacg
atccaatacataaccaatgttatcatccatggtctgcatattcatgactgcaaaccaacc
ggaaatgccatggttcggagctcaccatcgcactacggttggagaacaatggcggatggt
gatgggatttcaatctttgggtcaagccatatctgggtcgaccataattcactttcaaac
tgtgctgatggcttggttgatgcgatcatgggatcaaccgctatcaccatctccaacaat
tatttcacccaccataatgaggttatgttacttggtcacagcgacacgtacgatagggac
aagattatgcaagtgactatagcatacaaccatttcggggaaggtcttgttcaaagaatg
ccaaggtgtaggcatggatatttccatgttgtaaataatgactacacacactgggaaatg
tatgctattggtgggagtgcagatcctacaattaatagccaaggcaacagataccttgcc
cctgttaatcctaatgctaaagaggtgactcatagagtgcagacaacaggaagatggaga
cattggaattggaggtcagaaggagacctaatgttaaacggagccttcttcgtaccatct
ggaacgggtgccggagccagttacgcaagagcatcgagcctaagtgccaaaccgtcgtcc
gtcgtcgcctctcttacttccggatccggtgcactcgtttgccgacgaggccgccagtgt
taa
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