Cynara cardunculus var. scolymus (artichoke): 112518044
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Entry
112518044 CDS
T05604
Name
(RefSeq) serine/arginine repetitive matrix protein 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112518044
03015 mRNA surveillance pathway
112518044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112518044
03041 Spliceosome [BR:
ccav03041
]
112518044
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112518044
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
112518044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
112518044
NCBI-ProteinID:
XP_024981342
LinkDB
All DBs
Position
LG 9:complement(10624973..10633336)
Genome browser
AA seq
947 aa
AA seq
DB search
MSGGFFRGTTADQDTRFSNKHAKLLKSQKFPPELENLVDMTKVKMDVMRPWIAHRVTELL
GFEDEVLINFIYGLLEEKVVNGKEIQISLTGFMEKNTGKFMKELWTHLLSAQKNASGVPQ
QFLDAKEEETRKKQEDTDRITRELKRTKEKEGRELEQERMKRTKEREGRQLEQERVKMDR
EADNVKAATLEPHSRSHTKVSSKWSSDDKGTNDRNGSKGTARISQSPHSADRSPSPPRGA
RSRSISKSFSNSKSHSRSRSLSASPKPLRRSVSFERRHHSLSRRSLTPRRVESRLRSPSP
PQVRRSVSHSRGRSPSPARRRLRSPIRRRSRTPVWRRSRSPMRRRSRTPLRHRSRSPIQR
RSRSPIRRRSRSPIRRRSRSPIWRRSRSPIRRRSRSPIRRRSRSPMRRRSRSPVRRRSRS
PIRRRSRSPIRRRSRSPIRRRSRSPMRRRSRSSIRRRSPSPFQRRSESSGSPSRQESLSP
MHPRSPSPVRRRSPSPARRRYQRAPSTPHDRSPPIRRRTAFPGRQRSPRPGSMSSSPSGR
ISLSPIHGTSPSLLKKGSPRRQQRSPVRSPRDGNRIVQKSPHDRQASRKETAEGCKTSVS
SGNPPPVSVRSLERDPKGRGISHNGEPALSSSPYNSLSGSVSPIAGRSPSEERSPIPPKR
QRESIVKDHPDSIEVEEMTFSRVKEEKYQNKNTVNDRRDKNKHSPEFASHHSSDAQAQKR
KSKSDDGRRNYPELAEEPLGSRKDNLSSDRARISEKGYKTDEKNQLRASDVKGSPRHQEA
AKLPKLLQKVERHNRSGSLDSGSEESDEARGGASQKKKRKRSKKKDVTSDDDYSHDSRTE
DRKEAKRRRKEEKKLKKEEKRKRREERRRRKDSRRTEKLKPKAGGNVSPSSDPDKSHDSH
ASDAEPVRRRGERVTDNEEALSDQKKLEIELREKALESLRAKKGIGH
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggtttcttccggggtacgacggctgatcaagatactcgtttctcaaacaag
catgccaagctgcttaaatcgcaaaagtttccacctgaattggaaaatttggtggacatg
acgaaagttaagatggatgtcatgcgaccatggatagcacacagggtgactgaacttctt
ggatttgaggatgaagttctcattaacttcatttatggccttctagaggaaaaggtagtt
aatggcaaagagattcaaatttcacttactgggtttatggagaaaaatacagggaagttc
atgaaagagctttggacacatcttctcagtgcccagaagaatgccagtggtgtccctcaa
cagttcttggatgccaaggaggaagaaactaggaagaagcaggaggatacagaccgtata
accagagaattgaagagaactaaagagaaggaaggccgggaacttgaacaagagagaatg
aagagaacaaaagagagggaaggccgtcagcttgagcaagagagagtgaagatggacaga
gaggctgacaacgtgaaagctgctactttggagccacactcaaggagccacacaaaagtt
tctagcaagtggtcaagtgacgacaaagggacaaatgataggaatggctcaaaaggaacg
gccaggatctcccagtctccacattctgctgatcgttcaccgtcaccaccccgtggtgca
cgttcaagatccattagcaagtccttttctaattccaaaagtcattcaaggtcaagaagt
ttgtcagcatctcctaaacctttaaggcgctctgtttcttttgaaaggaggcaccattct
ctatcaagacggtctctcacacctcgtcgagtggagtctcgcctgcgatccccatcccct
ccacaggtgaggcgatctgtgtctcattcacgtggacgatcaccttcacctgcaaggcga
aggttgcgctctcccatacgacgcagatctcggactcctgtgtggcgcagatcacggtcc
cccatgcgacgcagatcacgtacgcctttaaggcataggtctcggtctcccatccagcgg
aggtcgcggtctccaatccggcggaggtcgcgttctccgatccggcggaggtcacgttct
cccatctggcgaaggtcgcgttctcccatacggcggaggtcccgttctccaatccggcgg
aggtcacgttctccaatgcgaaggaggtcgcgatcccccgtaaggcggaggtcgcgttct
cccatccggcgaaggtctcgttctcccatccggcgaaggtcgcgttctcccatccgtcgg
aggtcgcgatcccccatgcggcggaggtcgcggtcctccatccgaaggaggtcaccgtcc
ccttttcaacgcaggtcagagtcctctgggtctccttcacgacaagaatcactgtcccct
atgcatcctagatctccttccccagttagacgcaggtccccgtctcctgcaaggcggcga
tatcaaagggctccatcaactccacacgatcggtctcctccaattaggcgtaggacagcc
tttcctggtcgtcagagatccccaaggcctggaagtatgtcttcttcaccatcaggtcgg
atttctctgtctcctatacatggtacatccccttcgctgctgaaaaaaggatcaccaagg
cgccaacagagatcacctgtacgatctcctagagatgggaacagaattgttcagaaaagt
cctcatgatcgtcaagcatcacgaaaagagactgctgagggttgtaaaacatctgtctcg
tcagggaatccacctcctgtttcagtaaggtctttagaaagagatccgaagggccgaggg
atatctcataatggagagccagctttatcttcctcaccatataactctctgtccggttct
gtatctcctatagctgggagaagtcctagtgaggagaggagtcctatacctccaaagaga
caaagagaaagtattgtcaaggaccatccggatagcatagaggtggaagaaatgactttt
tccagagtgaaagaagagaaataccagaataaaaacacggtcaatgataggcgtgacaag
aacaaacattctcccgagtttgctagtcatcactctagtgatgctcaagctcagaagaga
aaaagcaaaagtgatgatggaaggaggaattatcctgaactggcagaggagcccctcggt
agccgtaaggacaatttatcaagtgacagggcacggatttctgaaaaaggatataaaact
gatgaaaagaaccaattacgtgcaagtgatgtcaaaggcagtcctaggcatcaggaagca
gcaaaattgccaaagttgttgcaaaaagttgagaggcataatcgaagtggctcactggat
tctggctctgaagaaagtgatgaagcgagaggtggtgctagccaaaagaaaaaacgcaaa
aggtcgaaaaagaaagatgtcacatcagatgatgattatagtcacgactcccgtacagaa
gacaggaaggaagctaagagaagacgcaaagaggagaaaaaattgaaaaaagaagagaag
cgtaaacgacgggaagagcgacgtcgcagaaaggatagtcgacggacagaaaagctaaaa
ccgaaggcaggcgggaatgtttctccatcttcagatcctgacaaaagtcacgatagccat
gcttctgatgcagaacctgttaggaggaggggtgaacgtgtaactgacaatgaggaggca
ttgtctgatcagaagaaacttgagattgagttgcgcgaaaaggcccttgagtctctcaga
gccaaaaagggcattggtcattag
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