Cynara cardunculus var. scolymus (artichoke): 112518148
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Entry
112518148 CDS
T05604
Name
(RefSeq) KH domain-containing protein At3g08620-like
KO
K14945
protein quaking
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112518148
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112518148
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
STAR_dimer
KH_1
KH_KRR1_2nd
Motif
Other DBs
NCBI-GeneID:
112518148
NCBI-ProteinID:
XP_024981514
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All DBs
Position
LG 9:complement(17085291..17090710)
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AA seq
291 aa
AA seq
DB search
MSSLYGQNFNFSPARAPSSPHIWANPDVESTYLGELLEEKLKLAPFMRVLPICSKLLNQE
IFRASAMIPNQGFNDYDRLQRGSPSPLNPSDVMPDIDANGLIRWNGNAGWSPLQHERLGM
PPGLPMDHWNSAPASPSSFITKRILRLDIPVNNFPNFNFVGRLLGPRGNSLKRVEATTGC
RVFIRGQGSIKDPEKEESLRGRPGYEHLNEPLHILIEAELPASIIDVRLRQAQEIIEELL
KPVDESQDLYKRQQLRELAMLNSNFREDSPQPRGSMSPFGSSGMKRAKTGW
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtttatatggtcaaaacttcaatttctcacctgctcgagccccttcttctcca
catatatgggcaaacccagatgtcgaaagtacgtatctgggagagctacttgaagaaaag
ctgaaacttgcgccttttatgagagttcttcccatttgcagtaaattattgaatcaagag
atatttcgggcttcagcaatgatacccaaccaaggttttaacgactatgacagactgcaa
cgtggtagcccgagtcctctgaatccttcagacgttatgccggatattgatgctaatggt
ttaatccgttggaacggaaatgccggatggagtcctcttcaacatgagagattaggtatg
ccaccaggattgccaatggatcactggaattcagcaccggcaagcccaagttcgttcatc
acaaagaggatcttgcgcttggatatacccgtcaacaacttccctaatttcaacttcgtt
ggaagacttctaggtcctagaggcaattcattgaagcgagttgaagccacaaccggatgc
cgtgtgtttattagaggccagggatccatcaaagatcccgaaaaggaggaaagtttgagg
ggtagaccgggatatgaacaccttaacgaaccgcttcatatattgattgaggccgagttg
cctgcaagcatcatcgatgtacgtttgagacaagctcaggaaatcatcgaagaactgctc
aaacccgtggatgaatctcaagatttgtataagagacaacagttaagagagcttgctatg
ctaaactcaaactttagagaagatagtcctcaaccgagaggcagcatgtcgcctttcggt
tcaagtggcatgaaacgtgcaaaaaccggttggtga
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