Cynara cardunculus var. scolymus (artichoke): 112518198
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Entry
112518198 CDS
T05604
Name
(RefSeq) small nuclear ribonucleoprotein Sm D2 isoform X1
KO
K11096
small nuclear ribonucleoprotein D2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112518198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112518198
03032 DNA replication proteins [BR:
ccav03032
]
112518198
Spliceosome [BR:
ccav03041
]
Complex A
U1 snRNP components
Sm proteins
112518198
U2 snRNP components
112518198
Complex B
U1 snRNP components
112518198
U4/U6.U5 tri-snRNP components
112518198
Complex C
U2 snRNP components
112518198
DNA replication proteins [BR:
ccav03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
112518198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
112518198
NCBI-ProteinID:
XP_024981580
LinkDB
All DBs
Position
LG 9:complement(12979917..12983633)
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AA seq
109 aa
AA seq
DB search
MSRPMEEDGQQTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM
VLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
NT seq
330 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgaccaatggaggaagatggacaacagaccaagaatgaggaagaggagttcaac
actgggcccctctctgtcttgatgatgagtgtcaaaaataacacgcaggtgctcatcaac
tgcaggaacaataaaaagcttttagggcgtgtgagagcttttgatcgacactgtaacatg
gtgctcgaaaatgttagagaaatgtggacagaggtgccgaaaacaggaaaaggcaagaag
aaagctcttcctgttaacaaagacagattcatcagcaagatgtttcttcgaggggattct
gtcatcattgtactgagaaatcccaagtga
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