Cynara cardunculus var. scolymus (artichoke): 112518262
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Entry
112518262 CDS
T05604
Name
(RefSeq) LOW QUALITY PROTEIN: transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112518262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccav03009
]
112518262
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
112518262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Utp13
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_EML
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR41
WD40_like
Beta-prop_Nup120_160
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_IFT140_2nd
Prok-RING_1
Pox_TAP
Motif
Other DBs
NCBI-GeneID:
112518262
NCBI-ProteinID:
XP_024981666
LinkDB
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Position
LG_9
Genome browser
AA seq
637 aa
AA seq
DB search
MEKVVNLWDLHDYNCKMGVPTNEAIEAVCVIRTTSPFSSCLQGKKTDPLAFQFFTVGEHG
IVRIWNSQGAVCLFQQASSDVTVSKEDEEEAKRGFTSAVMLPSDQGLLCVTADQEFLFYS
PTXSSQGTFQLNLNKRLVGYNEEIVDMKFLGVEEQFLAVATSVEQVRVYDLSSMSCSYVL
AGHTDIVLCLDTCTTSFGRTLIVTGSKDNTVRLXDSDSKGCIGVGRGHMGGIGALKKLLE
LNIYFWRFXLFLLHYIIYVFYELYIFFVSDSASSICDQDRTARIWKLPELTPGVVLRGHK
RGIWSVEFSPVDQCVITASGDKTIXIWAISDGSCLKTFEGHTSSVFKVQFLTRGAQFVSC
GADGLVKLSTVKTNECVATYDQHEDKVWALTVGKKTEMLATGGSDAVINLWHDSTAADKE
EAFRKEEEGILKGQELENXVLDANYTKAIHLXFELRRPHKLFELFAELCRRKDANDQVKQ
ALGVLGTEEXRQLLEYIREWNTKPKLCHIAQFVLFKVFTILPPTEIIEMRGIGELLEGLI
PYSQRHYSRIDRLERSTFLLDYTLNEMSIVEPDMGVVEDPKDESLVGPTEAVAKGQERAN
EEEVSKKRSSKKRKVKILNGWNKKIKGSVLLMVQLFL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagttgtaaatctgtgggaccttcatgactacaactgcaagatgggtgtgcct
acaaatgaggcaattgaagctgtatgtgttattcgtaccacatctcctttttcttcatgt
ttgcaaggcaagaaaaccgatccgcttgcattccaatttttcaccgtcggcgaacatgga
atagttcggatatggaattctcaaggtgcagtctgtttatttcaacaagcatcttcggat
gttactgtcagcaaagaggatgaggaggaagcaaaaagaggtttcacatctgctgtgatg
ttgccctccgatcaggggttgttatgtgtgactgctgatcaggaatttctcttctattcc
ccaaccraaagttctcaaggaacatttcagttgaatcttaacaaaaggcttgtaggatac
aacgaggaaatagttgacatgaagtttttgggcgttgaagaacagtttcttgctgttgct
acgagtgttgagcaggtacgagtgtatgatctttcctcgatgtcgtgttcttatgtattg
gcaggccacaccgacattgtactatgtctggatacgtgtacgacaagctttggaagaaca
ctaattgtaacggggagcaaagataacaccgtaagattatgrgattccgacagcaaaggt
tgcattggagttggaagaggtcacatgggaggcattggagctctgaagaaactgttggag
ttgaatatatatttttggagattttaactttttcttctccattatataatatatgttttc
tacgagttatatatattttttgtttctgattctgcatcatctatttgtgatcaggaycgt
actgcgcgtatctggaagcttccagaattaactcctggtgttgtactaagaggacacaaa
agaggaatctggtctgtagagttttcgccagttgatcagtgcgttataacagcttctgga
gataagaccataragatatgggccatatcagatggttcatgtctaaaaacatttgaaggg
cacacatcgagtgtattcaaagttcaatttctcactcgtggggcacagttcgtttcttgt
ggtgctgacggtttggtaaagctctcgaccgtaaagacaaatgaatgtgttgcaacttat
gatcaacatgaggacaaggtgtgggccttaactgtggggaagaaaacagaaatgttggca
actggtggcagtgatgctgtaatcaatctgtggcatgattctactgctgcagataaagag
gaagcattccggaaagaggaggaaggtatattgaaaggccaagagctagaaaatgytgta
ttagatgccaactacaccaaggccattcatcttgygtttgagctccgtagaccacataag
ctgtttgagttatttgccgaactttgcaggaggaaagatgccaatgatcaggtaaaacaa
gctcttggtgttcttggcaccgaagagtwccgccaattgttggagtacattagagaatgg
aacacgaagccgaagctatgccacattgcccagtttgtgctttttaaggttttcaccatc
cttccaccaacggagataatcgagatgagaggcattggagaacttcttgaagggctcata
ccatattcacaaaggcattacagcaggatagatagattggaaaggagtacgtttctgttg
gattacacacttaacgagatgtcgattgtcgaaccagatatgggtgttgttgaggacccg
aaagatgagtctctggtgggtcctacagaagctgtcgccaaagggcaagaacgggccaat
gaagaagaagtttcaaagaagcggtcttcaaagaaacggaaagttaaaatattgaacgga
tggaacaagaaaatcaagggatcggttctactgatggttcagttatttctgtaa
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