Cynara cardunculus var. scolymus (artichoke): 112518272
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Entry
112518272 CDS
T05604
Name
(RefSeq) DNA topoisomerase 3-beta isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03440
Homologous recombination
ccav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112518272
03460 Fanconi anemia pathway
112518272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccav03032
]
112518272
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112518272
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
112518272
DNA replication proteins [BR:
ccav03032
]
Eukaryotic type
DNA Topoisomerases
112518272
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
112518272
FA (Fanconi anemia) pathway
112518272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
EBNA2_Core
Motif
Other DBs
NCBI-GeneID:
112518272
NCBI-ProteinID:
XP_024981681
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Position
LG_1
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AA seq
875 aa
AA seq
DB search
MATKVLMVAEKPSIALSIATALSGGRMSSRRGSTEVHEFDGTFLGYRVQYKVTSVIGHVF
RFDFNISYYLHFFFCKSSVDFPPAYQDWAATDPLSLFQAPVVKSESNPKAHIRQHLNREA
RGCGDLVLWLDCDREGENICFEVIECTGFANDGRRVHRARFSSVTEKDIIHAMKNLVEPN
KDEALAVDARQEIDLKVGVAFTRFQTTYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLH
ISTFKPEKFWVVLPYIIKNGFELKLEWNRNRLFDHDVAEMFQKLVAEDAVVKVISTSEKQ
ESKGRPSGLNTVNLLKVASSALGFGPHLAMQLAERLYTQGFISYPRTESTAYPSSYDFKG
TLGTLVSNSVWGSYVQTLLSNGYHKPRSGTDVGDHPPITPMRSANEDMLGGDAWRLYQYV
CQHFLGTLSPDCKYVRKKIEFSVGGEFFHCVGQHVTVKGFTAIMPWLAVPEKNLPQFTEG
EKIEISKVELYEGKTAPPDYLSESELISLMEKHGIGTDASIPVHINNISERNYVKVEAGR
RLVPTVLGVSLIRGYQCIDADLCLPDIRGFIEQQITLVSKGQADHSLVVQHVLEQFKQKF
NYFIKQIENMDALFEAQFSPLSDSGRSLSKCGKCLRYMKYIAMLPSRLYCNTCEEVYYVP
QKGTIKLYKELTCPLDNFELLLFSMAGPDGKSFPLCPYCYNNPPFEGIDTLFGAPKTGGS
VKLGKGVGMPCFLCPHPTCRHSLISQGVCACPECDGTLVLDPVSAPKWRLYCNICNCLVL
LPQGAHRISTTKERCPECDSTIIEVDFNKKTTPLKDGATLHVGCILCDELLHSLVEMKHG
KSFFRRGRGRGRGRGRGRGRRGGRNQDPKMSFRDF
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaagtactcatggttgcggaaaagccaagcatcgctctttcaattgctaca
gcactgtccggtggtcgaatgtcatcacgaaggggtagtacggaggttcatgagtttgat
ggtacatttttagggtaccgggtacaatataaagtgacatcagtgattggtcatgttttc
aggtttgactttaacatatcttactatctacacttctttttctgcaaatctagtgtagat
tttccaccagcttatcaagactgggcagccacagatcctctcagtctttttcaagctcca
gttgtcaagtcagaatcaaacccgaaggctcatattcgtcaacatctaaaccgggaggct
cgtggttgtggagatctggtactgtggttggactgtgatcgtgaaggagaaaatatatgc
tttgaagttatcgagtgcacgggatttgccaatgatggtagaagagttcatcgtgcacga
ttttcttctgtgacggagaaagacattatccatgctatgaaaaatcttgttgagcccaac
aaagacgaggcattggctgtagatgctcggcaagaaatagatctgaaagttggagttgca
tttacacgatttcagactacttatttccaaggaaaatatggaaatctggattctagggtt
atctcatatggcccatgtcaaacccctacccttggattttgtgtgcagcgctaccttcac
attagtactttcaagccagaaaagttttgggttgtgcttccttacataataaagaatggt
tttgagctaaagctggaatggaatcgtaataggttgtttgatcatgatgtggcagagatg
tttcaaaagttagtagcagaagatgcagttgtgaaagttatcagtacgtcagaaaaacaa
gagagcaaaggtcgcccttctggtcttaatacggtgaatcttttgaaggttgcttcaagt
gcactagggtttggacctcacctggccatgcaattggctgagcgcttgtatacccaaggt
tttatcagctatccacggacagagagtacggcatacccttcatcatatgactttaaagga
actcttgggactttggtgagtaattcagtatggggtagttatgtccagacactgctcagc
aatggttatcataaaccccgatcaggaactgatgtaggtgaccacccgccaattactcct
atgcgatcagctaatgaagatatgctaggtggagatgcctggagactttatcagtatgtt
tgtcaacattttcttggtaccctgtctcctgactgcaaatacgtaaggaaaaagatcgag
ttttctgtgggtggagaattcttccattgtgttgggcagcacgtcacagtgaaaggattt
acagcaataatgccatggttggcagtgccggagaaaaatctacctcagtttacagaaggg
gagaaaatagagatttcaaaggttgagctatatgagggtaaaactgcgcctccagattac
ctgtctgagagtgagctgatctctctaatggaaaagcatggaataggaacagatgcatcc
attcctgttcacattaacaacataagtgaacggaactacgtgaaggtagaggctggaaga
aggttggttccaacggttttgggtgttagtcttataagaggatatcaatgtatagatgca
gatctttgtttgcccgacatacgaggtttcatagagcagcagatcactctcgtttctaaa
ggtcaagcagatcattcgcttgttgtgcagcatgtacttgaacaatttaaacagaagttt
aactactttattaagcagattgaaaatatggacgcattgtttgaagcacaattttctcct
ctttcagactctggacgttcacttagtaaatgtggaaaatgcttacgatatatgaagtac
atcgctatgcttccatcacggctatactgtaatacatgtgaggaagtctattatgttcct
caaaagggcacaattaagctgtacaaagaactaacatgtcctctggacaactttgagctt
ttgctgttttccatggctggaccagatggcaagtcattccctctttgcccttattgttac
aacaatcctccatttgaaggtatagacacattatttggtgcccccaaaactggtggttcg
gtcaagttgggaaagggcgttgggatgccttgttttctctgcccacaccctacgtgccgc
cattccttgatatctcaaggggtgtgtgcctgcccagagtgtgacgggaccctcgttctt
gacccggtcagcgctcccaaatggaggctttattgcaacatatgcaattgtcttgttttg
cttccccaaggtgctcatcggataagcacaaccaaggaaaggtgtcctgaatgcgactcc
accataatagaagtggactttaataagaaaacaacacctttgaaggatggagctacactt
catgttggatgtattctttgtgatgagttgcttcattcgctcgtggaaatgaagcatggg
aagtcattctttagacgtggcagagggagaggaagaggtaggggaagaggcagaggacga
cgaggtggtaggaaccaagaccccaaaatgagctttcgagatttctga
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