Cynara cardunculus var. scolymus (artichoke): 112518409
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Entry
112518409 CDS
T05604
Name
(RefSeq) uncharacterized protein LOC112518409 isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112518409
Membrane trafficking [BR:
ccav04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112518409
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
112518409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
WDR55
Beta-prop_THOC3
Beta-prop_VPS8
WD40_Prp19
Synaptobrevin
Beta-prop_IFT140_1st
Beta-prop_WDR5
Beta-prop_WDR3_2nd
TFIIIC_delta
Lgl_C
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
112518409
NCBI-ProteinID:
XP_024981859
LinkDB
All DBs
Position
LG_9
Genome browser
AA seq
1108 aa
AA seq
DB search
MFAKKLLHKATKLHNLHHHQHNLKGCLTPEDLDFRIAVHYGIPSTASVLAFDPIQRLLAI
GTLDGRIKVIGGDNVEGLLISPKQLPFKYMEFLSNKGFLVSISNDNDIQVWNLENRSIVS
SLRWSSNITSFSVICGSFFMYIGDEHGLMSVLKLEEEAELLVMPYHISAKSLTEAAGSSF
PDHWTVVGVLHQPSSSGNRVLIAYESGLIVLWDVFEAQVVVVRGDKVLELKDGVDDSPGQ
VGHLLDATPEHSLEENEITALCWASSNGTILAVGYINGDIMFWKTSTTASSKGRKAGASF
NNVVRLQLSSAERKLPVIVLHWSANSKSQNDGDGQLFVYGGDEIGSDEVLTVLSLEWSPG
METLRCVGRAELALSGSFADMSLLPSAINNHRADLLVLTSPGHLQLFSHDSLSALMSEHE
KKVTLSSLECPVVIPTAHPVLSAANLSSLVGSENTSKFLLEIATNMKLNSTSKLTGGNWP
VSGGIVNQFASPEGYVIERIYIAGYMDGSVRIWDATSPVLSILCIIGEIKDVDVTGSTAP
ISELNFCSFTSGLAVGNQLGLIRVYNLNSSCKETSLHIVTGIKQEVHKQPQGGGPKCSAC
FHLLDSPVQALQYMDHGAKLAVAHECGRVAVLDMKLFSVLFLTNCLPNPSSPVISMTWKS
FVYNDGHVKSPKDSGRKDLDRPAERLMIISTKDAKLYVFNGDDNRMINSRPIQLKKDTTV
ISMHVIERGTSIVESVDQKESQQLTNDAAARSEPLIEVDKPKIEQHSQPENINSVQGATD
SLILLCCKDALCLYRLKSVLQGNEKPLCKVKLAKPCCWTSTFKKDEKTCGLALLYQSGEL
EFRSLPDLESVKVTSLMSILRWSFKANMERTMTSTENGQIAMTNGSEVAFISLLNVDDDF
GVRESLPSLHDKVLAAAVEAVISSSQKQKKKLGAPGVLVNMVKGFRAGKSNNGINFPDYF
GSSFSNLDKIFSKNPFPDPLESITNDQDDVELDIDDIEIDEPVSVPTSSHTKQNEEIGKR
TDREKLFDGDNSDVTPRLRTREEIIATYRKAGDASSVAGQARNKLLERQEKLEKISKRTQ
DLSNEAEDFASLANELVKVMERRKWWQI
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccaagaaactcttacacaaagctaccaagcttcataatctgcatcatcatcag
cataacttaaagggctgcctcactccagaagatttggattttcggatagcagtccattac
ggtatcccatctactgcatcagttcttgcctttgatcccattcagcgtttacttgccatt
gggacattggatggcaggataaaagtgattggtggtgataacgtcgaaggactcctaatt
tctcctaagcaattacctttcaagtatatggagtttctatccaacaaaggttttctagtc
agcatctccaatgacaatgacatacaggtgtggaatctggaaaataggtctatagtttct
agtttgcgatggagctccaacataacaagtttctctgtgatatgtggctccttcttcatg
tacattggagatgagcacgggttgatgtctgttttgaagctcgaggaggaggcagagctg
ttggtaatgccatatcacatttccgccaaatcccttactgaagcagctgggtcatcattt
ccggatcattggactgttgttggagttcttcatcaacctagttcttctgggaatagagtt
ttgattgcatatgagagtgggttgattgttctttgggatgtttttgaagctcaagtggtt
gtagttagaggtgataaggttcttgaactgaaggatggagttgatgattctcctggtcaa
gttggtcatcttttagatgctacacctgaacacagtttggaggagaatgagataaccgct
ctttgttgggcatcttctaatgggaccattcttgctgttggatacataaatggagatatt
atgttctggaagacatcaactactgcctctagtaaaggccgaaaagctggagcatcattc
aataatgttgtaaggctacagttgtcctctgctgaaaggaagctccctgtcattgtcttg
cattggtccgcaaacagtaaatcccagaatgatggtgatggccaattgtttgtttatgga
ggtgatgaaatagggtcagatgaagtattaacggttttgagtcttgaatggagccctgga
atggaaactctaagatgtgttggtcgtgctgagctcgctcttagtggctcctttgctgat
atgagtttattaccaagtgcaataaacaatcatcgagctgatttattagtactgacaagc
ccaggacatctgcaattgttcagtcatgatagtttgtctgccttgatgtctgaacatgag
aagaaagttactctctcttccttagagtgtcccgtagtgatacctacagctcatccagtc
ctgagtgcagcaaatctcagctcactagttggcagtgaaaacacttcaaagtttcttttg
gagatagccacaaatatgaagcttaattcaacatcaaagttgacagggggaaattggccc
gtatcaggaggcatagtaaatcaatttgcttctcctgaaggttatgtaatagagagaatt
tacatagctggttacatggatggatctgttcgaatctgggatgccacttctccagtctta
tcaatcctctgcattataggagagatcaaagatgtggacgtgaccggttccactgctcca
atttcagaactgaacttctgttccttcacttcaggtttagcagttggtaaccaacttggt
ttgatccgtgtatataacctcaattccagctgcaaagagacaagtcttcacattgtcact
ggaataaaacaagaagttcacaaacaacctcaaggtggagggcctaagtgtagtgcttgt
tttcaccttcttgattcccctgttcaagcacttcaatatatggaccatggagctaaacta
gctgttgcacatgaatgtggtcgtgttgcagtgcttgatatgaagttattctctgttttg
ttcctaaccaactgtttacctaaccctagcagtccagtcatttccatgacctggaaatca
tttgtgtataatgatggtcatgttaaaagccccaaagattcaggacgaaaggatcttgac
agacctgcagagagattgatgatcatatctaccaaagatgcaaaattatatgtattcaat
ggcgatgataatcgcatgatcaactctagaccaatacaattgaaaaaggatacaacggtt
atatccatgcatgttatagagagaggtacttccatcgtcgaatcagtggaccaaaaggag
tcacagcagttgaccaacgatgctgcagccagaagtgaacctcttattgaagtagataaa
ccgaagattgaacaacattctcagcctgagaatatcaactcggtccagggtgcaacagat
tcacttattttactttgttgcaaggatgcactgtgcttatatcgtttaaaatctgtgctt
caggggaatgaaaaacctttgtgtaaagtaaaacttgcgaagccttgttgttggacttca
acttttaaaaaagatgaaaagacttgcggattagcgttactttatcagtccggagaattg
gaattcagatccttgccagacctagaatcggtgaaagtaacctcgttaatgtcgatatta
aggtggagtttcaaggcaaacatggagaggactatgacttctacagagaatgggcagatt
gccatgacaaatgggtctgaagtcgcatttatctctctactgaatgttgatgatgatttc
ggggttcgagaatcattgccttctcttcacgataaagtgcttgcagctgctgtagaagct
gtgattagcagttctcaaaaacaaaagaaaaagctgggtgcccctggagtacttgttaat
atggtcaaaggatttagagcaggaaaatcaaacaacggaatcaactttcctgattatttt
ggatcaagtttcagcaatctggacaaaatcttttccaagaatccatttccggatccactt
gaaagcattactaatgatcaggatgatgtagaacttgatatagatgacattgaaatcgac
gaacctgtatccgtgcctacttcatcacatacaaaacaaaacgaggaaattggaaagaga
actgatcgggaaaaactatttgatggtgataattctgatgtgacgcccagactcaggaca
cgtgaagagatcattgctacttacagaaaggctggggatgcttcctcggtagctggacaa
gcaagaaacaagcttttagagcgccaggagaagcttgagaaaatcagcaaaaggactcaa
gatctaagcaatgaagcagaagactttgcatccttagcaaacgagcttgtaaaggtaatg
gaacgtagaaaatggtggcaaatatga
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integrated database retrieval system
