Cynara cardunculus var. scolymus (artichoke): 112518425
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Entry
112518425 CDS
T05604
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112518425
03036 Chromosome and associated proteins [BR:
ccav03036
]
112518425
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112518425
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
112518425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
HHH_9
Tex_central_region
Tex_N
S1
Motif
Other DBs
NCBI-GeneID:
112518425
NCBI-ProteinID:
XP_024981876
LinkDB
All DBs
Position
LG 9:complement(8640238..8649636)
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AA seq
1349 aa
AA seq
DB search
MARKSRKSKQEGDFTLILICIYRVFFFHFALYLSIFIFVYIDGIEVEVDEMVEPEYVDED
DDEFEKDGFIVDDLDEEEDLADGDDGKQKKRRKKRESNKNYLLDEDEYELLEDNFPGFSR
PKLGSENYKRLKKARMDADEGPSMFFDEEEYDRRGRARRTAEEKLKRTIFGDDDGSFLED
SADEQLLNEDKLLGEEDEMADFIVDEVETDEHGGPLRKAKVDKKKSRQAPGVSSSSMQGA
NDIFGDLDDLLIKYKLEPANVSRYDEATKLKEKKLEDEFEPIILSDKYMTKKDDHIRKID
IPERIQISEESTGPRPTDDTSIHRESDWILNQLRMGMVPWLVKGGSRTTEEGNELSILKD
DVKRFLELIHVEKLDVPFIAMYRKEECNSLFKDQELHEGDEESQHTSDQKPILRWHKVLW
TILELDRKWLLFQKRKSALQLYYNKRFEEEQSIYDETRLHLDQKFFESITKSLKVAETER
EIDDVDSKFNLHFPPGEVVVEKGEFKRPTRKSQYGICSEAELREVASKFGYNSEEFGLRI
SLEQMRMDELEDAKETPEEVASRFTCAKFENPQAVLKGARHMAAVEISCEPFVRKHVRRI
FMDNATLSTSPTAEGNVDIDSRHQFAGIKWLRDKPLTKFEDAQWLLIQKAEEEKLIEVSI
KLPTPIHDQLINDARDFYLSGGVSKSSQLWNEQRKQILKDAFDDFLIPSMEKEARALLIS
RAKSWLLMEYGRVLWNKVCVAPYQKKGLAPRVLACCWGPGRPATTFVMLDSFGEVLDVLY
AGSLSVRGQSVNDQQRKKNDQQRIVKFMADHLPDVVVLGAVNVPCSRLKEDIYEIICKMV
EDNSRDVGHNMDGVSVVYGDESLPRLYENSHISSEQLQSRSGIVKRAVSLGRYLQNPLAM
AATLCGSGKEILSWKLSPLQSFITSDEKYGMVEQVMVDVTNQVGLDVNLAVNHEWLFAPL
QFISGLGPMKAASLQRSLVRAGCIYSRKDLLNHGLGRRVFINAVGFLRVRGSGNATSSSQ
FIDLLDDTRIHPESYSLAQELAKDIYRADAQDDVNDDDDDMLETAIEHVRENPNLLKSLE
VDAYAKSKKRETKKDTLSLIKQELIHGFQDWRREYVEPSQDEEFCMISGETENSLAEGRT
VRVTIRRVLPQRAICNLESGLSGMLNKEDYSDDCKDDDLTERLKEGDILTCKIKSIAKDR
YQVFLSCRENDMKSDWTENSQAMDPYYHEVRDTSVSVKEKPCKVKELAKKLFKPRMIVHP
RFKNVTIDEALELLSEKELGESILRPSSRGPSYLTLTLKVYNGVYAHKDILEGGKDHTDI
TSLLHLGKTLKIGEDVFTDLDEVSLSLRI
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atggccagaaaatccaggaagtcaaaacaagaaggtgactttactctgattttgatttgc
atttaccgagtatttttctttcattttgctctctacttatctatatttatatttgtatac
atcgatgggatagaagttgaagtcgacgagatggtagagcctgaatacgttgatgaagac
gatgatgagttcgagaaagacggtttcatagtggatgatcttgatgaagaagaggacctg
gcagatggtgatgatgggaaacaaaagaagagaaggaagaagagagaatcaaacaagaat
tatcttcttgatgaagatgagtatgagctccttgaagataacttccctggcttttctcgc
ccaaaacttggaagtgaaaattataagcggctgaagaaagcaaggatggatgctgatgaa
ggaccatcaatgttttttgatgaggaagaatatgacagaaggggaagggctaggcgaacg
gcagaggagaagctaaagcgaactatatttggggatgatgatggttcatttctagaggat
agtgctgatgagcagctgctgaacgaggacaagttgcttggtgaagaagatgaaatggct
gacttcattgttgatgaagttgaaacagatgaacatggtggtccattgaggaaggctaag
gtagacaagaaaaaatccaggcaggcaccaggagtttcctcatcctcgatgcagggtgct
aatgacatatttggtgatcttgatgatcttttgataaaatacaagttagaaccagcaaat
gttagcagatatgatgaagccactaaattgaaggaaaagaagcttgaagatgaatttgaa
ccaatcattctttcagataagtacatgaccaagaaggatgaccatattaggaagatagat
attccagaaagaattcagatatctgaagaaagcacaggtcctcggccaacagatgatacg
agtatacacagggagagtgactggattcttaatcaacttagaatgggcatggtaccttgg
cttgtcaaaggaggtagtagaacaactgaagaagggaatgagttgtcgatacttaaggat
gatgttaagaggtttttggagctcatccatgttgaaaaattagatgtaccatttattgct
atgtataggaaggaggagtgcaatagcttgtttaaggatcaagaattacatgaaggtgac
gaggagagtcaacatacttctgaccaaaaacccattttgaggtggcacaaggtactttgg
actatcttggagttggacagaaagtggttattatttcaaaaacggaaaagtgctctacag
ttatactacaataagcgatttgaagaagaacaaagcatatatgatgagacacgccttcat
ttggatcagaaattttttgagtcgattaccaagtctctcaaagtagctgagacagaaagg
gaaattgacgacgttgactcaaaatttaaccttcacttcccgccaggtgaggtggtcgtg
gagaaaggggaatttaagaggccaacaagaaaatcacaatatggcatttgcagtgaagct
gaactgcgggaagttgctagcaagtttgggtataattcggaggaatttggattacggatt
tctcttgaacaaatgagaatggatgaactagaggatgctaaggaaacgccagaagaggta
gcatcaaggtttacatgtgcaaagttcgagaatccacaggctgtgcttaaaggtgctaga
cacatggctgctgttgagattagctgtgagccatttgtcaggaaacatgttcgtagaatc
tttatggataatgcaacattatcaacaagtcccactgctgagggaaatgtggacatagat
tcacgtcatcaatttgcagggatcaagtggttgagggacaaacctctgacaaaattcgag
gatgcacagtggcttcttattcaaaaagctgaggaggagaagcttattgaagtttctatt
aagcttcctacgcctatccatgatcagttgattaatgatgctcgtgacttctaccttagt
ggtggggtgagtaaatcctctcaattgtggaatgaacaacggaagcagatactgaaagat
gcttttgatgattttcttataccttctatggagaaggaggcaagagccttgttgataagt
agagcaaaaagttggttattaatggaatatggaagagtattatggaacaaagtctgtgtg
gcaccttatcagaagaagggacttgcacctagagttctggcatgctgttggggacctgga
aggcctgcaaccacctttgtcatgttggattcttttggcgaagttcttgatgtgttatat
gctggtagcctaagtgtacgtggtcaaagtgtcaatgaccagcaacgcaagaaaaatgat
caacaacgcattgtgaaattcatggcagatcacctacctgatgttgtcgttctgggagct
gtgaatgtgccttgtagccggctgaaggaggatatatatgagataatttgcaagatggta
gaagacaactctagagatgttggccacaatatggatggcgtaagtgttgtatacggtgat
gagtctctaccacgcttgtatgaaaattctcatatatcatccgagcagcttcagtctcga
tctggcattgttaagcgtgctgtttcccttggacgttatcttcaaaatccactagcaatg
gctgcaactctttgcgggtcagggaaagagatattatcgtggaaacttagccctttacag
agctttattacttctgatgagaagtatggcatggttgaacaagtcatggtagatgtcacc
aaccaagtggggcttgatgtaaatttggctgtaaaccatgaatggttgtttgctcctcta
cagttcatttctgggcttggacccatgaaggctgcttctttacagagatctttagtgaga
gctggttgtatatacagtaggaaggacttgttgaaccatggtcttggcagaagggtcttc
ataaatgctgttggtttcttacgtgttcggggaagtgggaatgccactagtagtagtcaa
tttattgatttattagatgatacaagaatccacccagaatcatatagtcttgcacaggag
ttagctaaagatatttatcgtgcagatgcccaagatgatgtaaacgatgatgatgatgat
atgctcgagacagcaatagagcatgtgagagaaaatcctaacctgttgaagagtcttgag
gttgatgcatatgccaaatctaaaaaacgggaaactaagaaagacaccctcagtcttata
aaacaggagttgatacatggtttccaggactggcgacgggaatatgtggaaccgagccag
gatgaagagttctgtatgatttctggggagacagagaatagccttgcggaaggaagaact
gtgcgggttactattcgcagagtactacctcagagggcaatatgtaatcttgaatcaggg
ttgagtggtatgctcaacaaggaagactatagtgatgattgtaaggatgatgatttgacc
gagaggttgaaggaaggtgatattttgacttgcaaaatcaaatcgattgcaaaagatagg
taccaggttttccttagctgtagggaaaatgacatgaagagtgattggaccgagaatagt
caagccatggatccctactatcatgaagttcgtgacacttctgtgagtgtgaaggaaaag
ccttgtaaggtgaaggagctagcaaagaagcttttcaagccgaggatgattgttcatcct
cgcttcaagaatgttacaatagacgaagccttagagttgctctctgaaaaagaacttggt
gagagtatcctccgtcccagctctcgtggaccctcatatttaaccttgacgctcaaagtt
tacaatggggtgtacgctcacaaggacattctagaaggtggaaaagatcatacagacatt
acaagcttgcttcatctcgggaagacactcaaaataggagaggatgtatttacagatctt
gatgaggtcagtttatcattaagaatatga
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