Cynara cardunculus var. scolymus (artichoke): 112518436
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Entry
112518436 CDS
T05604
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112518436
09123 Folding, sorting and degradation
03018 RNA degradation
112518436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112518436
03041 Spliceosome [BR:
ccav03041
]
112518436
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112518436
mRNA degradation factors
5'-3' decay
Lsm complex
112518436
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112518436
Complex C
U2 snRNP components
112518436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
LSM14
DUF1256
Motif
Other DBs
NCBI-GeneID:
112518436
NCBI-ProteinID:
XP_024981893
LinkDB
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Position
LG_9
Genome browser
AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDVELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttttcgtacttcaaggatttggtgggaagagaagtaactgtggaactgaag
aacgatttggcgattcgaggaactcttcattctgtagatcagtatttgaatattaagctc
gagaacaccagagttgttgatcaagaaaagtaccctcacatgctttcagtgaggaactgt
ttcataagaggatcagtagtgagatatgtgcagttaccacctgagggagtagatgtcgag
ctgctccatgacgccacaagaagagaagctcgaggtggttag
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integrated database retrieval system
