Cynara cardunculus var. scolymus (artichoke): 112518846
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Entry
112518846 CDS
T05604
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112518846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112518846
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112518846
U7-dependent histone pre-mRNA processing factors
112518846
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
MBL_MAP1B
Motif
Other DBs
NCBI-GeneID:
112518846
NCBI-ProteinID:
XP_024982381
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Position
LG 1:complement(706724..714471)
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AA seq
741 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASKIDAVLL
SHSDTMHLGALPYAMKQFGLSAPIYATEPVYRLGLLTMYDHYLSSKQVSEFDLFTLDDID
SAFQNVTRLTYSQNCHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAYNALSNQPSRRQRDQEFVDAILNTLRGNGNVLLPVDTAG
RVLELLLILEQYWEQNHLTYPIFFLTYISSSTVDYVKSFLEWMSDSIAKSFEHTRDNAFL
LKHVTLLINKNELENAPEGPKIVLASMASLEVGFSHDIFVEWAADSRNLVLFTERGQFGT
RARMLQSDPPPKAVKVTLSKRVPLVGEELAAYEEEQEQIKKEEALKATLVKEEETKAVIG
TDIAKADPMIIDGHAQVDAVGVRGEAYRDVLIDGFVPPSASVAPMFPFCDNSSEWDDFGE
VINPDDYVIKDEDMDMGSMPIVFQVGGDLDGKLDEGTASLMLDTTPSKVVSSELTVQVKC
SLVYMDFEGRSDGRSIKSILAHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEE
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWIDSEVEKTESGMLSSLPLSTTAPPH
KSVLVGDLKMADFKQFLAGKGIQVEFAGGALRCGEYVTLRKVGDASQKGGAAAIQQIVIE
GPLCEEYYKIREYLYSQFYSL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgtcggtgcaggtgacgccactgtgtggagtgtacaatgaaaacccattatca
tatttggtttccatcgatggcttcaactttcttatagattgtggttggaacgatcacttc
gatccctccctccttcaacctctatccagggttgcttcaaagatagatgctgtgttgttg
tcacattcagatacaatgcatcttggtgctttaccctatgccatgaaacaattcggactt
tctgctccaatttatgcaacagaacctgtctacagattagggttattaactatgtatgat
cactatctttccagcaagcaagtatcagagtttgatttgttcacactggatgatattgat
tctgccttccaaaatgtgacaagattaacctactctcagaattgtcatttatctggaaaa
ggagaagggattgtgattgctcctcatgttgctggtcatctcttgggaggtactgtctgg
aaaataactaaagatggagaagacgttatatatgctgttgacttcaatcatcgcaaagag
aggcatttaaatggaacagtgttagaatcttttgttcggcctgccgttcttataacagat
gcatataatgctttgagcaatcagccttctagacgtcaaagggatcaagaatttgtagat
gctatactaaacactctaagaggcaatggaaatgtattgctgcctgtggatactgctggt
cgtgtactggagctgcttttaatactcgaacagtactgggaacaaaatcatttgacctat
cctatcttctttctcacatacatatcatcaagcacggttgattatgtcaagagtttcctt
gagtggatgagtgattcaatagcaaagtccttcgaacatactcgtgataatgccttcctt
ctgaagcatgttactcttttgatcaacaagaatgaactagaaaatgccccagagggtcca
aagattgttctagcttctatggccagtttagaagtgggattttcacatgatatattcgta
gaatgggctgctgattcaagaaatcttgttctttttactgaacggggccagtttggtact
cgtgcacgaatgcttcagtcggatccacctcctaaagctgttaaagtcaccctttccaag
agagttccattggttggggaggagttagctgcatatgaagaagagcaagaacagattaaa
aaggaggaggctttaaaagccactctcgtgaaggaagaggaaacaaaagctgtgattgga
actgatattgccaaggctgaccccatgatcattgatggccatgctcaagtagatgctgtt
ggggtgcgtggggaagcatatcgtgatgtacttattgatggatttgttccaccctcagct
agcgttgctccaatgtttcccttctgtgataactcctccgaatgggatgattttggagaa
gtcattaatcccgatgattatgtaatcaaggatgaagatatggacatgggatccatgcct
atcgtttttcaggtgggtggagatcttgatggaaaactcgacgaaggcactgctagtttg
atgcttgatacaaccccatcaaaagtcgtgtcttctgaacttactgttcaagtcaaatgt
tccttggtttacatggattttgaagggcgttctgatggtcgctcaatcaaatcaattctt
gctcatgttgctcccttgaaacttgtcttggtgcacggatcagctgaggccactgaacat
ttgaagcaacactgtctgaaacatgtttgtccccacgtatatgctcctcaaattgaagaa
acaattgatgtcacatcagatttgtgtgcttataaggtgcaactctctgagaaactgatg
agcaatgttctgtttaagaagcttggagattacgaaatagcgtggattgattctgaggta
gaaaagacagagagtggcatgttgtcatcactgcccctctcaacaacggctcctcctcac
aagtcggtacttgtcggagatctaaaaatggcagattttaagcagtttcttgccggaaag
ggtatccaggtagaatttgcaggtggggcactgcgttgtggggagtatgttacactgagg
aaagttggtgatgctagtcagaagggtggtgctgcagctatccaacagatagttatagaa
ggtccactatgcgaagagtattacaagattcgggaatacctatattcgcagttttattca
ctttaa
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