KEGG   Cynara cardunculus var. scolymus (artichoke): 112518950
Entry
112518950         CDS       T05604                                 
Name
(RefSeq) protein transport protein SEC31 homolog B-like isoform X1
  KO
K14005  protein transport protein SEC31
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    112518950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccav04131]
    112518950
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:ccav02044]
    112518950
Membrane trafficking [BR:ccav04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    112518950
Secretion system [BR:ccav02044]
 Sec (secretion) system
  Eukaryotic Sec-SRP protein
   112518950
SSDB
Motif
Pfam: WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40 WDR55 Beta-prop_RIG_2nd TPR_Sec16 Beta-prop_EIPR1 SRA1 MIOS_WD40 TPR_GEMI5 Prp18
Other DBs
NCBI-GeneID: 112518950
NCBI-ProteinID: XP_024982529
LinkDB
Position
LG 10:13486593..13504265
AA seq 1123 aa
MATSACVKEVNRSASVAFAPDAPCLAAGTMAGAVDMSFSSSANLEIYKLDFQSDDRNLPL
SGAIPSSEPFNRLSWGKSPSSGSEEFSLGLIAGGLVDGNIGIWNPRLLMSSEESENALVQ
QLSRHKGPVRGLEFSSLSPNHLASGAEGGEICIWDFAKPTEPTHFPPLKGSESVTHGEIS
FLSWNKKVQPILASTSFHGATVVWDLRKQKPIISFSDSVRRRCSVLQWHPDFATQLIVAS
DDDSSPSLRLWDMRNTMSPLRELVGHTKGVVAMSWCPNDSSYLLTCAKDNRTICWDINSA
EIVSELPAGSNWNFDVHWYPKLPGVISASSFDGKIGIYNIEACARYGAGDGYFGSAHLRA
PKWYQRRAGVSFGFGGKLVSFHATGSSSGASEVDVHDLVTEHSLVGTSSEIEAAMRSGER
SSLRLLCDKKTQESESEDDREIWGFLKVMFEDDGTARTKLLNHLGFSLPPELNDTVQNDL
VQDVSSLSLDKNEEAKEGYMEHNQTFNYPSDNGEDFFNNFPSPKADTPVSTSHNNFAIEE
SVPAVEDPTKGSDLQEGSADPSFDDAIQRALVVGDYKGAVAQCIAANKMADALVIAQVGD
ASLWESTRDQYLKKNASPYLKIVAAMVNNDLVSLVNIRPLKSWKETLALLCTFAQRDEWT
LLCDTLASRLMAADNTLAATLCYICSGNIDRTVEIWSKKVTAEHEGKSYVDLLQDLMEKT
VVLALATGQKRFSASLCKLVEKYAEILASQGLLSTAMEYLKLMGTEDLSPEFVVLRDRIA
LSSEPGKIPNVLHMGILEQNATVSTDFGYSQTHTGAVYGANQQTNSAVEPLQSYYQDEKL
YRQEQYQPQPGPSYNNQYEQPQRSMFVPSPAAPSPPMGFNQPPVATQAAARPFVPMTPPI
MRNADQYQQPPTLGSQLYPDAYQSQVNASSNYQAGPPGTVSLGPVPSPMVPTTGPKLPHD
VSPTPPVRGFMPINNTPMQRTTSGQMPPNSATESAAPVAAPLPTVQTADTSNVPAQQRAV
IGTLTRLFNETSEALGGSHAVPAKKREIDDNSKKIGALFAKLNNGDISKNAAEKLVQLCQ
ALDRGDFPTALKIQVDLTTSDWDECSFWLATLKRMIRIRQNAR
NT seq 3372 nt   +upstreamnt  +downstreamnt
atggctacatcagcgtgcgttaaggaagtgaatagatcggcatcggtggcgtttgccccc
gatgcgccatgccttgccgccggaactatggccggagccgtagacatgtcgtttagttct
tctgcgaatcttgaaatctacaagcttgatttccaatctgacgatcgtaaccttccgtta
tctggagccatacccagttcagaaccgtttaatcggttgtcgtggggcaaatcaccgtca
tctggttcggaagaattctcactcggtctcattgccggtggccttgtagatggcaacatc
ggtatctggaaccctcgcttacttatgagttcggaggaaagtgaaaatgctcttgttcaa
caactatcaagacacaaggggcctgttcgtggtctagagtttagttctctttcaccaaac
catctcgcttctggtgctgaaggaggtgaaatttgtatatgggattttgctaaaccaaca
gagcctacacattttcctcctctcaagggcagcgagtctgtgacgcatggagaaatatca
tttttatcatggaataagaaggtccagcctatcttggcatcaacttcttttcatggagca
actgtggtttgggaccttaggaagcaaaagccaattataagtttctcagattcggttaga
agaagatgttcagttttgcaatggcatcctgattttgccactcagcttattgttgcttca
gatgatgatagttcaccttctttaaggctatgggatatgcggaacacaatgtcacccttg
cgagagttagttggtcatactaaaggtgttgttgcaatgtcatggtgtcccaatgatagc
tcctatttgcttacttgtgccaaagacaaccgcactatttgctgggacattaattcagct
gagattgtctctgaacttccagctggatccaattggaattttgatgtgcactggtatccg
aagctacctggggtcatatcggcatcttcatttgatggaaaaattggtatttataacatt
gaggcttgtgctcgatatggtgctggtgacggttactttggctcagcacatttaagagcc
ccaaaatggtaccaacgcagagctggagtctcttttggttttggtggaaaacttgtttct
tttcatgcaactggttcttcatctggagcttcagaggttgatgtgcatgacttggttact
gaacatagtttagttggcacctcatctgaaattgaagctgcgatgcgtagtggagagaga
tcttcgttgaggcttttgtgtgacaaaaaaactcaagagtctgaatctgaagatgacaga
gaaatatggggatttttgaaggttatgttcgaagatgatggaacagcaaggacaaagctc
ttaaatcaccttggcttcagtttacctccagaactaaatgatacagtacaaaatgatctg
gttcaggatgtaagttctctcagtcttgacaaaaatgaagaagctaaagaaggatatatg
gagcacaaccagacattcaactacccgtctgataacggcgaagatttctttaacaatttt
ccaagtcctaaagctgacacacctgtgtcaacttctcataataactttgctattgaagaa
tctgttccagctgtggaagacccaacaaaaggaagtgatttacaagagggaagtgctgac
ccttcatttgatgatgctattcaacgtgcattggttgttggggattacaagggagctgtt
gcccagtgcatagctgcaaataagatggcagatgctttagttatcgcgcaggttggtgat
gcttccttgtgggagagcacacgtgatcaataccttaaaaagaatgcttccccatacttg
aagattgttgctgcaatggtaaataatgaccttgttagcctagtaaatatcaggcccctg
aaatcttggaaagaaactcttgctctcctctgcacttttgcacagagagatgagtggact
ttactatgtgacacccttgcttcgagactcatggctgctgataatacattggcggcaact
ctttgttatatatgttcagggaatattgatagaactgtagagatctggtcaaagaaggtt
acagccgagcatgaagggaagtcctatgttgatcttcttcaggatttaatggagaaaact
gttgtccttgctttagcaactgggcaaaagagattcagtgcttctttatgcaaacttgtt
gagaagtatgctgagatattagcaagtcaaggacttctatcaacagccatggaatatttg
aagctaatgggcactgaagacctgtctccagaattcgtggtcttacgagatcggatagca
ctctcatctgaacccgggaagatacctaatgttttgcacatgggtatactggaacaaaat
gcaactgtctctacagattttggttactctcaaacacatacgggagctgtatatggtgca
aaccaacaaactaattctgctgtggagccccttcaaagctattatcaggatgagaagctt
tatcgtcaggaacagtatcaaccacaacctgggccttcatacaataatcaatatgaacag
ccacaacgtagcatgtttgttccatcacctgcagctcccagtcctccaatgggcttcaat
caacctccagtcgcaactcaagctgctgcaagaccctttgttcctatgacacctccaatt
atgagaaacgctgatcaataccagcagccccccaccttgggttctcagttatatcctgat
gcttaccagtctcaggtgaatgccagctccaattatcaagcaggaccaccagggactgtt
tctcttggccctgtcccatctccaatggttcctactactggtccgaagttaccacatgat
gtgagccccacaccacctgtaagaggattcatgccgatcaataatacaccaatgcaaaga
acaacttcaggtcaaatgccacccaacagtgctacagaatctgcggcacctgttgcagcc
cctcttccaacagtacagactgctgacacatcgaatgtacctgcccagcaaagggcagtt
attggaacattgactagactcttcaacgagacatcagaagcattgggaggttcgcatgca
gttccagcaaagaagcgggagatcgatgacaactcaaagaaaataggtgctttgtttgcc
aaactaaacaatggtgatatttccaaaaatgctgctgaaaagcttgttcagctctgtcaa
gcattggatcgtggcgacttccctaccgccctcaaaatccaggtagatctcacaaccagt
gactgggacgagtgcagcttctggttagcaacgctgaaacgaatgatcaggattaggcag
aatgcaaggtga

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