Cynara cardunculus var. scolymus (artichoke): 112518960
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Entry
112518960 CDS
T05604
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112518960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112518960
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
112518960
SWR1 complex
112518960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
DBINO
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
112518960
NCBI-ProteinID:
XP_024982550
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Position
LG_10
Genome browser
AA seq
2026 aa
AA seq
DB search
MASKGPRSRLDHETRAKRQKALEPPKEPRRPRTHWDHLLEEMVWLSKDFESERKWKLALA
KKIATRASKGMVDQATRGERRVKEEELRMKKVALNISKDVKKFWTKIEKLVLYKHRLELD
QKKKKALDKQLQFLLGQTERYSTMLAENLGDSSPRQHVHSSLVQEQPAIQYEDHTDINGC
AEPNVESQSDILEIDEDYKSEKEPEDDEHTIEEDEALITEDERREELEALHNEVDLPLEE
LLRRYAVGEDNTESTPGKTDGVAELTQASEDDSRCNGNDSSDHILRRKSTQPARSRHCAE
SNGGLSVSKNHHSEVEKHGIRKRKGLQEGRKKYLELDFNDENEDGDFILANGEEKDDETT
LLEEEELAKAEADDTVDEIALLQNESEIPIEDLLARYRQDSDINRSTEEDSESEGASESV
DLSDSSAHQETEVDLQHVQLDLDEVHSPIEIPVNCSRDIQHVSMAEADLPTELHSVKCST
SEQEEKPDQTVDEGGENEDRIADAAAAARSAQPTGNTFLTTKVRTKYPFLLKFSLREYQH
IGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWE
TEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKIFKRKKWKYL
ILDEAHLIKNWKSQRWQTLLNFNTKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEF
KDWFSNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSR
RQRNLYEDFIASSETQATLASSNFFGMISVIMQLRKVCNHPDLFEGRPIISSFDMNGIDI
QFCSSVCSVLASSPFSTVDLCELGFIFTHLDFGMTSWESDEVQAIATPSSLIEERAEQVQ
SKIKFGKESSGFNIFEEIQKALIEERLKEVKERVASIAWWNSLRCRRKPLYSTGLRDIVS
VPNPISVSTLTDIVLSPVERFKQMVDQVESFMFAIPAARAPSPAGWCSKSGTSVFIDQNY
KARCSTLLSPLLTPIRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRRLKSEGHRALIFT
QMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKFFLFILSTRSGGVGIN
LVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVNIYRLISESTIEENILKKAKQKRAL
DDLVIQSGEYNTEFFKKLDPLELFSGHGTVPVNNIQKEKTRTNGVEVPVSNADVEAALKH
AEDEADYMALKKVEQEEAVDNQEFTEEAIGKLEDDELLNDEDVKFDESADHGGLVTAPVE
DNLQHVNCSNPNEEMDMNLVKDEDDVDMLDDVKQMAAAAAASGQEILSFDDQLRPIERYA
VRFLELWDPIIDSALIEPQDRFEEAEWELDHIEKLKEDMEAEGDDDEEPLVYERWDSEFA
TKVYQEQVKALAEHQLMEEREMEAREKEQAESDSMNRNETIVRKPKSKKKTKKTKFKSLK
KEALSSDTKTTNVESPIEVDDELDDELILVKKRKKPVDDGEVKITKKSKKVKKNSEPSSL
DVDSNSLAEQQDEPKEMKLCGSNLEVDHKPVNRSKTGVKISIASMPVKRVMTIRLEKLKK
GSIWPNDCLPAPDSWLSLEDAVLCAVVHEYGVNWSLASDVLNGMTTGGFYRGILRHPVHC
CERYRELVQRYVLSTSDNLHNEKSSNVGVGKALLRVTEEHAKMLLDMVSELPDQAYTLQK
HFFHLLASVWRATTRYGHRKTPLPLRSARFHNSRDPIRPQSQKMKFTNLSQISILVADAL
ENSQNVPREERVSNFSERNEAQAIDQVGITLEFSSGRDDQSVPLPSAVSLSIDVSEPVSS
EPITMGGNQHFRSSKDTAECRFRDASRATIEGGLSLPPSAFPISDIKSRPLAKSQLSGKH
RLPNPEAPLKSSKSKLKKTIIDSNEILPPNLQPPSSSPNDSCLRFDSTSSVPDLVFDDFL
SSSSLEMGNEVCLDAGSFDLVPHNYDPGFTLGLEDCSLSPEFTDIG
NT seq
6081 nt
NT seq
+upstream
nt +downstream
nt
atggcctctaaaggtccaaggtctagacttgatcatgagacgagggccaagcggcaaaag
gcacttgaaccacccaaagaaccccggcggcccagaactcattgggaccatcttctagaa
gagatggtgtggttatcaaaggatttcgagtcagagagaaaatggaaattggccctggca
aagaagattgccacaagggccagcaaaggtatggtggatcaggccacaagaggagaaaga
cgagtgaaggaggaagagctccggatgaaaaaagttgcactcaacatttccaaagacgtg
aagaagttttggacgaaaattgagaagctggtgctatacaagcatcggttagagcttgat
caaaagaagaaaaaagcgcttgataagcagcttcagtttcttttaggacaaacagaaagg
tattcaacaatgctggcagaaaatcttggggattcatctcctcgtcagcatgtgcattca
tccttggtgcaggaacaaccggcaattcaatatgaagatcataccgatatcaatgggtgt
gctgaaccaaatgttgagtcccagtcagatattttagaaattgacgaagactataagtct
gaaaaggaaccagaagatgatgagcatacgattgaggaagatgaagccctcataactgaa
gatgaaagacgagaggaactagaagctttgcacaatgaagtagatttaccccttgaggag
ttactccgccgttatgcagttggagaagataatacagaaagtactccaggaaagactgat
ggtgtagctgaactaacccaggcatcggaagatgactctcggtgtaacggaaatgacagt
tctgatcatatattaaggagaaagagtactcaaccagctcggagtcgtcattgtgctgaa
agtaatggcggcttatcagtttcaaaaaatcatcattcagaagtcgagaaacatggcatt
agaaagaggaaaggacttcaagaggggcgcaaaaaatatttggaattagactttaatgat
gaaaatgaggatggcgactttatacttgcaaatggagaggaaaaggatgatgaaacgacc
ttgctggaggaagaagaactagcaaaggccgaggctgatgatacagtagatgagattgca
ttattgcagaatgagagtgaaattccaatagaggatttgcttgcaaggtatagacaggat
tctgacattaatagaagtacagaggaggattcagagtctgaaggtgcgtctgaatctgta
gatttgtctgattcttcggcacatcaagagactgaagttgatctgcagcatgttcaattg
gatttggatgaagttcattcacctattgaaatcccggtcaactgttctagagatattcag
catgtttccatggctgaagccgatttacctaccgaactccattcagtcaaatgttctact
agtgaacaggaagaaaagccagatcaaacggttgatgagggtggggagaatgaggacaga
attgctgatgcagcagctgctgctagatcagcacagccaacaggcaatacgtttctgaca
actaaagtgcggacaaaatacccttttcttttgaagttctctctccgtgaatatcaacac
attggattggactggctagtgacgatgtacgaaaaaagacttaacgggattcttgccgat
gaaatggggcttgggaagacaattatgacgatagctttgcttgcacatctcgcttgtgaa
aaggggatatggggtccccatctcattgtagtaccgactagtgtcatgctcaactgggaa
acggagtttctaaaatggtgcccggcttttaaaatcttgacgtatttcggaagtgcaaag
gagcgtaaacacaagagacaaggatggctgaaaccgaattcttttcatgtatgcataacg
acttacagacttgttattcaggattcgaaaattttcaagcggaagaaatggaaatacctg
atcttggatgaagcccatctcataaaaaactggaagtctcagagatggcaaacgctttta
aattttaacacaaagcggcgtattcttttgacgggtacccctctgcagaacgatcttatg
gaactgtggtctttaatgcatttcttgatgccacacatttttcagtctcatcaagaattt
aaagattggttcagtaatccgatatctggaatggttgaaggtcaagaaaaagtaaataaa
gaagtagttgaccgactgcataacgtgctccgtccttttatactccgtcgcctaaagagg
gacgtggagaaacagttaccgatgaaacatgagcatgttatatactgtagactctcgagg
aggcagcggaatttgtacgaagatttcatagctagctcagagacgcaagctactcttgca
agttctaatttttttgggatgataagtgttataatgcaactccgtaaagtttgcaaccat
cctgacttatttgaaggtcgtcccattattagttcttttgatatgaatggcatcgacatc
cagttttgttcttctgtttgttcagtgcttgcttccagtccgttttctactgttgatctt
tgtgaattagggttcatattcactcatcttgatttcggcatgacatcatgggagagtgat
gaagttcaagccatcgccacaccctcgagcttaattgaggagcgtgcagaacaagttcaa
agcaaaatcaagtttgggaaagagtcgagtgggtttaatatctttgaagaaattcaaaag
gcacttatagaagagagactaaaagaagttaaggaacgggtagcatcgattgcatggtgg
aattctttgaggtgcaggagaaaacccttgtattcaacgggtttacgagatatcgtctct
gtcccaaatcccatttccgtctctacgcttacagacattgtactgtctccggttgaacgg
ttcaagcagatggtggatcaggtcgagagtttcatgtttgcaatcccggcagcaagagct
ccttcgcctgctggatggtgcagcaaatccggaacttccgtgttcatagaccaaaattac
aaggcgagatgttcaacacttctatcacccctactaacacctattcgtcctgctattgtc
cggaggcaagtttattttcccgataggcggttaatacagtttgattgtggcaagctgcaa
gagcttgctgttcttcttagacgactgaaatcagaaggtcatcgagcactaatattcact
caaatgacgaaaatgcttgatgttttggaagctttcataaatttatatggatatacgtac
atgcgtttagatggttccaccccgcctgaagagaggcaaactctaatgcagcggttcaat
acgaacccaaaattttttcttttcattttgtcaactcgtagtggcggtgtaggtatcaat
ctggtaggtgcagatactgttatattctatgatagcgattggaatcctgcaatggatcaa
caagctcaagatcggtgtcacaggataggacagacacgtgaagtaaatatttaccgttta
atcagcgagagcaccattgaagagaacattttaaaaaaggcaaagcaaaagcgggctctt
gatgatttggtgattcagagtggagagtacaacaccgagtttttcaaaaagcttgatccg
ttggaattgttctcgggacacggaacggttcctgtaaataatatacagaaagagaagact
cggactaatggggttgaagtcccggtgtctaatgcggacgtggaggctgcattgaagcat
gcagaagatgaagcggactacatggcgctaaagaaagttgaacaggaagaggcggtggac
aaccaagaattcaccgaagaagccatcgggaaactggaagatgatgagttattgaatgat
gaagatgtgaaatttgatgaatcagccgatcatggtggattagttacggcaccagtagaa
gacaatctgcaacatgtaaattgtagtaacccgaatgaagagatggatatgaatttggtc
aaggatgaagatgatgttgacatgctggatgatgtcaaacagatggctgcagcagctgca
gcctcgggtcaggagatcttatcgtttgacgatcaacttcgtccaattgaacgttatgca
gtacgttttctggagctctgggatcctattattgacagtgccttgatagagccccaggat
aggtttgaagaagctgaatgggagttggatcatatcgagaagttaaaggaggacatggaa
gcagaaggtgatgacgatgaggaacctttagtctatgaaagatgggattctgagtttgca
acaaaggtataccaagaacaagtcaaagcattggctgaacatcagttgatggaagagcgt
gaaatggaagctagagagaaggaacaagcggaatctgactcaatgaacaggaatgaaacg
attgttcggaaacccaagtcaaagaagaagacaaagaaaacaaagttcaaatctttgaaa
aaagaagctctatcttccgacacaaagactacaaacgtagagtcaccaatagaagttgac
gatgaacttgatgatgagttgatcctggtgaagaaacgcaaaaaaccagtggatgacggt
gaagtgaagattaccaagaagtccaaaaaggtcaagaagaattctgaaccgagctcttta
gatgtggattcaaattctttagccgagcagcaagatgaaccaaaagaaatgaaattatgt
ggaagcaatcttgaggttgatcataagcccgtcaacagaagcaaaacaggagtgaaaatc
tctatcgcttcgatgcctgttaaacgggtgatgaccataaggctggagaagttaaagaag
ggaagcatatggccgaatgattgtcttccggcaccagattcttggttatcattggaggat
gcggtactttgtgccgtggtacatgaatatggtgtaaattggagtctggctagtgatgtt
ctgaacggaatgacaacaggagggttttacagaggaattcttcgtcatcccgttcattgt
tgcgagaggtatagggagctcgtacagagatacgtgttgtctacttctgacaatcttcat
aacgaaaaatcaagtaatgttggtgttggcaaagctcttctgagagtaaccgaggagcat
gccaagatgttgttggatatggtatcggaattgcctgatcaagcgtacactcttcagaag
catttctttcacctacttgcatctgtgtggagggcaactactcgttatggtcaccggaaa
accccattgcctctcagaagcgcaagatttcataattctcgagaccccattaggccacaa
tcacaaaaaatgaagttcactaacctaagccagattagcatattagtagctgacgcactt
gaaaactctcaaaatgtaccaagggaggaaagagtttccaatttcagtgaaagaaatgaa
gctcaagccattgaccaggtgggaattactctagagttttcttcaggaagggatgatcaa
agtgttccattgccatcggctgtatctctgtcgatagatgtctcagaaccagtatcatcc
gaacccatcacaatgggcgggaatcagcattttagatcatccaaggatactgctgaatgt
cgtttcagggatgcatcaagggccaccattgagggtggtttaagcttgccaccatcagca
ttcccgataagcgacatcaagtctagaccactggctaaatctcaactgtcaggaaaacac
aggctgccgaatcctgaagcaccattgaagtcttctaaatccaaattgaagaaaaccata
atcgattccaatgaaatccttcctcccaatttgcaaccaccatcatcatctcccaatgat
tcgtgtttgagattcgattcaacatcttctgttcctgatctcgtgttcgatgattttcta
agttcatcttccttagaaatgggcaatgaggtttgtctagatgcaggaagtttcgattta
gtaccccataattacgatcctggtttcactttgggtctcgaggattgttcattatctcca
gaatttactgatattggatag
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integrated database retrieval system
