Cynara cardunculus var. scolymus (artichoke): 112519032
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Entry
112519032 CDS
T05604
Name
(RefSeq) cullin-4-like isoform X1
KO
K10609
cullin 4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03420
Nucleotide excision repair
ccav04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112519032
09124 Replication and repair
03420 Nucleotide excision repair
112519032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112519032
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112519032
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112519032
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
112519032
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
112519032
TCR (transcription coupled repair) factors
Cul4-CSA complex
112519032
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112519032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
ORC5_lid
Motif
Other DBs
NCBI-GeneID:
112519032
NCBI-ProteinID:
XP_024982704
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All DBs
Position
LG 10:13006410..13022958
Genome browser
AA seq
832 aa
AA seq
DB search
MSQPNTSTSNTHINNARRRSSATSTSPQPTTSTGGGGGIHFPAMKKPRSQSVACSVDNKN
GFQQQHFNNNSSVNPSSMFEDPTGNEVIDPIATSVAGFTANLSRKKATPPQPAKKLVIKL
VKAKPTLPKNFEENTWAILKSAISAIFLKQPDPCDLEKLYQAVNDLCLHKLGASLYQRIE
RECEAHVSAVLQSLAGQSEDLVVFLSLVEKTWQDFCDQMLMIRGIALYLDRTFVKQTQNV
RSLWDMGLQLFRKHLSLASEVEHKTVFALLKMIESERLGESIDRTLLNHLLKMFTALGIY
SESFEKPFLECTSEFYAAEGVKYMQQSDVPDYLKHVEVRLHEEHDRCVIYLDAITRKPLV
ATAEKQLLVQHISAILDKGFMMLMDGNRIQDLRRMYILFCRVNALESLRQALSLYIRKTG
QGIVQDEEKDKDMVSSLLEFKSSLDRIWEDSFSKNEAFCNTIKDAFEHLINLRQNRPAEL
IAKFVDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSAS
IDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARSKLPSGIEMSVHV
LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGRK
ELAVSLFQTVVLMLFNDAKKLSFQDIRDATSIEDKELRRTLQSLACGKVRVLQKIPKGRE
VDDNDSFTFNDAFTAPLYRIKVNAIQLKETVEENASTTERVFQDRQYQVDAAIVRIMKTR
KVLSHTLLITELFEQLKFPIKPSDLKKRIESLIDREYLERDKNNPQIYNYLA
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaacccaacacgagtacctccaacacccacatcaacaacgcccgcaggcgctcc
tctgccacctctacatctccacaacccaccacctctaccggcggaggaggggggattcac
ttccccgcgatgaagaagccgaggtcccagtctgtcgcttgctctgttgacaacaaaaat
ggcttccaacaacaacacttcaataataattcttcggttaacccttcttccatgttcgag
gatcccaccggaaatgaagttattgatcccatcgctacctctgttgccggattcaccgcc
aatttgtctcgtaaaaaggcaacgcctcctcaacctgctaagaagcttgtcatcaagcta
gtcaaagccaagccaaccttgccaaaaaactttgaggagaatacatgggcaattttgaag
tcagccattagtgccatatttctgaagcagccagatccctgcgatttggagaaactttat
caagccgtcaatgatctttgcctgcataagctgggggcaagtctttaccaacggattgaa
agagagtgtgaagctcacgtatctgctgttttacaatctttagctgggcaaagtgaagat
cttgtggttttcttatcgcttgttgagaaaacctggcaagatttttgcgaccagatgttg
atgatccgcggtatagcgttgtatcttgaccgcacattcgtgaaacaaactcaaaatgtg
cgatcgttatgggacatgggcctgcaactttttcggaagcatttgtcactagcttcagaa
gttgagcacaaaacagtatttgcccttttgaaaatgatagagagtgagaggcttggtgaa
tcaatagacaggacacttcttaaccatcttttgaagatgttcaccgcattggggatttac
tctgagagttttgagaagccattcctcgaatgtacttcagagttttatgctgctgaggga
gtaaaatacatgcaacaatcagatgttccagattatttaaaacacgtggaggtaagattg
catgaagaacatgacagatgtgtaatctatctagatgctatcacaagaaagccattggta
gccactgctgaaaagcagcttcttgtgcagcatatttctgcaatacttgacaagggtttc
atgatgttgatggatggtaatcgcattcaagatcttcggaggatgtatatactcttttgc
agagtaaatgcccttgaatccttacgacaggcccttagcttatacatccggaaaaccggg
cagggcattgtacaggatgaagagaaggacaaagatatggtgtcctctctattagaattc
aagtcctctcttgatagaatttgggaagatagcttttcgaagaatgaagccttttgcaac
acaatcaaagatgcatttgagcatctcattaatctacgccagaaccgccctgcagagttg
atcgcaaagtttgtggatgagaagctccgtgctggaaataagggtacatcagaggaagaa
ttggagggcactcttgataaagtcttggttttgttcagatttatacagggtaaggatgta
tttgaagcattctataagaaggatcttgcgaaaaggctactgttaggaaagagtgcatct
attgatgctgaaaaatccatgatttccaagctgaaaaccgaatgtggtagccagtttacc
aacaagcttgaaggaatgtttaaggacattgaattatccaaagagatcaatgaatctttc
aaacaatcatctcaagctaggagcaagctcccatcaggaatagagatgagtgtccacgtt
ttaacaaccggttactggcctacatatccaccaatggatgttcgtcttcctcatgaatta
aatgtctatcaggacatttttaaagagttctacttgagtaaatacagcggtaggcgattg
atgtggcaaaattcattaggtcactgtgtgttgaaagcagaatttcctaaaggtagaaaa
gagcttgctgtttctttgtttcagacagtcgttctgatgctgttcaacgatgcaaagaaa
cttagttttcaagatattagagatgctaccagcatcgaggacaaagaactgcgaagaaca
ttgcagtcccttgcttgtgggaaagtccgtgtcctccaaaagattccaaaaggtagggaa
gtcgatgataacgactctttcacattcaacgatgcctttacagctcctctatatcgtata
aaggttaatgcaattcagttgaaagaaactgttgaagaaaatgcgagcaccacagagaga
gtgttccaagatcgtcaatatcaggttgatgccgctattgttaggattatgaagaccagg
aaagtgctgagtcacacacttctcataactgaactctttgagcagctgaagtttcctata
aaaccatcggatttgaagaagaggatcgaaagcctgattgacagggagtacctggagaga
gacaagaacaatcctcaaatatacaattacttggcatag
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