Cynara cardunculus var. scolymus (artichoke): 112519066
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Entry
112519066 CDS
T05604
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112519066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112519066
Enzymes [BR:
ccav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112519066
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
HECT type E3
112519066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Arm
Motif
Other DBs
NCBI-GeneID:
112519066
NCBI-ProteinID:
XP_024982785
LinkDB
All DBs
Position
LG 10:26116230..26124893
Genome browser
AA seq
1536 aa
AA seq
DB search
MKSMGNRGHKRTETVDELPADKRTCSSLEFRPSSSTSPVQTPTTSVNQTHDHDMETSSSA
SGSGRTDEDKDSAYGSCDSDEMGDAEHIRNRHAILDYQRQRLSGDQVKFKRVLSNLNEEI
EESAQQAALMELCEILSFCTDSSLSSLMADSLSPILIKLARHESNPEIMLLSIRALTYLC
DIYPRSAGFIVRHDGVTALCQRLLAIEYVDVAEQCLQALEKISREQPLACLMSGAIMAVL
TYIDFFSTSLQRVALSTVVNICEKLPSEGSSPFMDAVPILCKLLQYEDNQLVEHVATCLI
KIAARVHQSPDMLDELSKHGLIHQVAHLIDLNSRTTLCHSVHTGLIGLLVKLASGSMVAV
RTLFDLNISSILKDILATYGLSHGMSSPRTVDGHCNQVHEVLKLLIQLLPVVGRNQEVQL
ATEKAAFLVNHPDLVQKFGNDLLPVLIQVVNSGVDLYVCYGCLSVIDKLVYYSNSDMLLS
LLESTNISRFLAGVFTRKDRHVLMLALNISDTILQKNSDVFVGPFVKEGVLFAIDALTVQ
EKGSQFMFSMFNEIHLSNSSSQKVAAKDAIRCLCYSFDANQSSSTSESWNCKLEKDCVKT
LAKHIRTNYFNTNSSTSENGMTAVLEELKSLSAELTSMLGADSMLEEEYDSVLHRIMSHL
SGEDVISTFEFVESGIAESLFKYLSSGECLRKESDSHGTKTQSCIAERRLEAFWRLFLSS
TDQPFNNFSLSAFISKLQSALSSVEDFPVMLNNVPKHRNSYTTVPHRRCTTYPCLKLLIV
KGEGETTLSDYSGDVQNVDPFSDFDAIERFLWPKVCSNNDKDINLVMKVCDENGSSAQSS
SDTSRYNVGQTSVESTSRIEIQADSAEHDQHATQKDGIISTERPQSSGNDSLSPQLSFYH
EGKQMDRSLTIYQAILQQQKAEYDSLTHASLWNQVHRVTYKRSSNFGNSSSPYFGCRPCW
SSALDKPTSYGQFSPLLSHMLVREIGSAVEKSTPCHDILFLLKTLESVNMFRFHLLSRQR
ICAFAEGRISDLDGVKATVSGIPMNEFVNNRLTEKLEQQMRDPLAISTGGMPSWCTQLMA
SCPFLFSFEARCKYFKLVSKHQGQRRVSSQSNLGSPSGLQNDAPMPRRKFLVYRHQILES
AAKMMDLHANQKVVLEVEYDEEVGTGLGPTMEFFTLVSNEFQKPGLGMWRGDNSSLASMQ
SLGNQDSVIVASPFGLFPSPWCPSISVASGIEFSEVIRKFFLLGQVVAKALHDGRVLDLP
FSKAFYKLFFGQELTVYDIQSFDPDLGKTLIEFQALVQRRKYLESVRENSTAELDSCFRG
TKIEDLHLDFTLPGYPDYILASGPNKEMVNATNLEEYIDLVVDATINSGISRQMDAFKSG
FDQVFQMKHLQIFTDEELERLLCGESETWNSNQLSDLIKFDHGYTASSPPIIHLLEILQE
VDYEQQRAFLKFVTGAPRLPLGGLSSLNPKLTIVRKHCDKLVDADLPSVMTCANYLKLPP
YSTKLWVFAGNNEGEAFLRDNRRTRGVPSLLACGSC
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtatggggaaccgggggcataaaagaacagaaacagttgatgaattgccagcc
gataagaggacttgtagttcattggagttcagacccagttcatcaacgtcaccagttcaa
acaccaactacatccgtaaaccaaacccatgaccatgatatggaaacatcttcatctgct
tctggctcaggcaggacagatgaagataaggattcagcatatgggtcttgtgattctgat
gagatgggtgatgcagagcatatacgaaacaggcatgcaatactcgattaccaaaggcag
cggttatctggtgatcaagtgaaattcaagagggtattatcaaatctgaatgaagaaatt
gaggaatctgctcaacaggctgctctcatggagctttgtgaaatattatctttctgtaca
gacagttctttatcgagtttaatggcggattccttgtctcctattcttataaagttggct
cgccatgaaagcaatcccgagataatgcttttatcaatcagggctctaacttatctatgt
gacatttatcctcgatccgcaggttttattgttcgacatgatggagttacagcactctgt
cagagattgctggccatcgagtacgtggatgttgctgaacagtgtttgcaagcattagag
aaaatttcacgcgaacaaccacttgcttgtttaatgtctggtgcaattatggctgttctt
acatatattgatttcttctcaactagtctccagcgggttgctctttccactgtggtgaac
atatgtgagaagctcccatctgaaggctcttcaccttttatggatgcagttccaatattg
tgcaaacttctgcagtacgaggataatcagcttgttgaacatgtcgctacttgcctaatt
aaaatagcagcacgagtacatcaatcccctgatatgctggatgaactttctaaacatggg
ttgattcatcaggttgcacatctcatagacctgaacagccggacaactctatgtcattct
gttcatactggtctgattgggctacttgttaagcttgcttctggttctatggtagctgtc
aggacactttttgatcttaatataagcagcattttgaaggatatattggcaacatatggc
ctttcacatggaatgtcttcccctcggacagttgatggacattgcaatcaggtgcatgaa
gttctgaagttgttgattcagcttctgcctgttgtaggcagaaatcaagaagttcaattg
gccacagaaaaagcagcttttttggtgaatcatcctgatcttgtgcagaagtttgggaat
gatttgttacctgtcttgatccaggtggttaattctggtgtggatttatatgtttgttac
ggatgtctatccgttatcgacaaattagtttattacagcaactctgatatgcttctcagt
ttactggagagcaccaacatttcaaggtttttggctggagtgttcactaggaaggacaga
catgtactaatgctagcccttaatatttctgataccattctgcaaaagaatagtgatgtt
tttgtgggaccctttgtaaaggaaggggtcctttttgccattgatgcacttaccgtccaa
gaaaagggttcacagtttatgttttcaatgttcaacgaaattcatttatcgaatagttca
agtcaaaaagttgctgcaaaagatgccatacgatgcttatgctattcgtttgatgccaat
cagtcttcatcaacttcagartcatggaattgtaagttggagaaggattgtgttaagact
cttgcgaaacacataagaacaaattacttcaacacaaattcgtccacctcagagaatgga
atgactgctgttcttgaagagctgaaatctttatctgctgaattaacttctatgttaggg
gctgatagtatgcttgaagaagagtatgatagtgtattgcataggatcatgtcacatctt
agtggagaagatgtgatttctacctttgaatttgttgagagtggcattgctgagtcatta
tttaaatacctatctagtggcgaatgtttgagaaaagagtctgacagtcatggcacaaaa
actcaatcctgcattgcagagagaagactggaggcgttttggaggctttttttgtcatcc
acagatcagccattcaataacttctcactatcggcatttatttcaaaattacaaagtgct
ttatcttctgttgaagattttcctgttatgttgaacaatgtacccaagcacagaaattca
tatactactgttccacataggcgttgcaccacatacccatgtctgaaacttctgattgtg
aagggagagggagagacgactttgagtgactactctggagatgttcagaatgttgatcca
ttttcggattttgatgcaattgagaggttcttatggcctaaagtttgctccaacaatgat
aaagatataaatttggtcatgaaagtgtgtgatgaaaatggctctagtgcccaatcatcg
tctgatacaagtcgatacaatgttggacagacttctgttgaatcaacaagcaggattgaa
attcaagctgactctgcagaacatgaccaacatgctacacaaaaagatggtatcatcagc
acagagcgtcctcaatccagtggaaatgatagtctttcaccgcaactatcgttttaccat
gaaggaaagcagatggatcggtctttgactatatatcaggctattcttcaacaacaaaaa
gcagaatatgacagtctcacccatgcatcattgtggaatcaagtacacagagtaacatac
aaaagatcatcaaattttgggaacagtagttccccatattttggctgtcgcccgtgttgg
tcatctgccttggacaagcctacatcatatgggcagttctctccgcttctttcgcacatg
cttgttcgtgaaattggttctgctgtggaaaaatctactccgtgtcatgatattttgttt
ttgctgaaaactttggaatctgtgaacatgttcagattccatcttctgtctcgccaaaga
atttgtgcttttgctgaaggcagaatcagtgacttggatggtgtaaaagcaacagtttcg
ggtattccaatgaatgagtttgtaaataataggttaacagaaaaactagagcagcagatg
cgagatcctttggccatctctacgggtggcatgccgtcttggtgtacgcaattaatggca
tcatgccctttcttgtttagctttgaggcaagatgcaagtacttcaaattggtgagtaag
catcaaggtcaacgtcgggtttcatctcaaagtaatttgggaagcccaagtgggctccaa
aatgatgcccctatgccccggagaaaatttctggtttatagacatcagattctggaatca
gctgccaaaatgatggacctgcatgccaatcaaaaagttgttcttgaagtggaatatgat
gaggaagttggtactggtctcggtcccacaatggagttctttacactagtcagtaacgag
tttcaaaagcctggcctggggatgtggcgaggagacaattcgtcgcttgcttcaatgcaa
agcttaggaaaccaggattctgtgattgttgcatctccatttggacttttcccgagccca
tggtgtccttccatcagtgttgcaagtggtatagagttttcagaggtgatcagaaaattt
ttccttttgggccaggtggtggcgaaggctctacacgatggaagggttttggatcttccc
ttctccaaagctttctataaactattctttggacaggaactcacagtgtatgacatccag
tcatttgaccctgatttagggaagacacttatcgagtttcaggctcttgttcaaaggcga
aaatatttagaatcagttagagaaaattcaacagctgaacttgattcttgcttccggggt
acaaaaattgaggatctacacctggattttactcttcctggctatcctgattacatcctt
gcttctgggcctaataaagaaatggtaaatgcaactaatttggaggaatatattgatctg
gtagtcgatgctacaataaattctggaatttcgagacaaatggatgcttttaaatcgggg
tttgatcaggtcttccaaatgaagcatcttcagatattcactgatgaagagctagagcgt
cttctatgtggagaaagtgaaacttggaattcgaaccaactttcagatctcatcaagttt
gatcatggatatactgctagcagtcctcccattatacatcttctggagatcttacaagaa
gttgactacgagcagcaaagagctttcttgaagtttgtgactggtgcaccacggcttcct
cttggtggtttatcatcgctcaacccaaaactcacaatcgtacgcaagcattgtgataaa
ctggtggatgccgacctccccagtgtgatgacgtgtgctaattacctgaaattgcctcca
tactctaccaagttgtgggtttttgcaggaaacaatgaaggagaagcttttttacgcgat
aacagaaggacaaggggcgttccatctctcttagcttgtggttcttgctga
DBGET
integrated database retrieval system
