Cynara cardunculus var. scolymus (artichoke): 112519196
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Entry
112519196 CDS
T05604
Name
(RefSeq) ABC transporter F family member 1-like
KO
K06185
ATP-binding cassette, subfamily F, member 2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccav03009
]
112519196
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
112519196
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_tran_Xtn
AAA_21
SMC_N
AAA_29
MMR_HSR1
AAA_28
AAA_15
AAA_18
AAA_23
AAA_22
RsgA_GTPase
AAA_24
AAA
VapE-like_dom
RecG_N
ORC-CDC6-like
Motif
Other DBs
NCBI-GeneID:
112519196
NCBI-ProteinID:
XP_024982959
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All DBs
Position
LG 10:12224504..12237881
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AA seq
602 aa
AA seq
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MVSDASKKKAAQKKAAAAAKRGGKAAAVAASKKAAEIGKVKGSSSSDNLANGMGSLVISD
RTCTGVLCSHPLSRDIRIESLSLTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTS
IGQRELPIPEHMDIFHLTREIEASDMSSLEAVMNCDEERLKLEEEAERLIGQDDGGGEAL
ERVYERLDAMDASTAEKRAAEILNGLGFNKKMQEKKTRDFSGGWRMRIALARALFMNPTI
LLLDEPTNHLDLEACVWLEETLKKFERILVVISHSQDFLNGVCTNIIHMQNKKLKMYTGN
FDQYVQTRSELEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG
GLTEVVTRDKVLVFQFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNLDFGVDLDSRVALVG
PNGAGKSTLLKLMSGELVPLDGMVRRHNHLRIAQFHQHLAEKLDLEMSALAYMMSEYPGN
EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFSWLAYRQPHMLLLDEPTNHLDIET
IDSLADALNEWDGGMVLVSHDFRLINQVAHEIWVCENQAVTRWQGDIMGFKEHLRRKADP
SG
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggtttctgatgcaagcaagaagaaggcggctcagaagaaggccgcagctgccgctaag
agaggaggcaaggccgctgctgttgccgcgtcgaagaaggcggcggaaattggtaaggtg
aaagggagttcgagttccgataacttggcgaatgggatggggtctcttgtgatctctgat
cggacatgtactggcgttctttgttctcatcctttatctcgggatattcggatagagtct
ctatcacttacttttcatgggcacgatctaattgttgattcagagctggagctcaactat
ggaaggcgatatggtttgcttgggttgaatgggtgtggtaaatctactcttcttacttca
attggacaacgagagcttcctattccagaacacatggatatattccatcttaccagagag
atcgaagcttctgatatgtcgtcacttgaggctgtgatgaattgtgatgaagagaggctg
aagttggaggaagaggctgaacgcttaattggtcaggatgatggtggtggagaagctctc
gaacgagtttatgaacgcttggatgctatggatgcatccactgctgagaagcgtgctgct
gagattctgaatggtcttggttttaacaagaagatgcaagagaagaaaacccgagacttc
tctggtggttggagaatgcggattgcattggctcgtgctttgttcatgaaccccaccatc
ttgttacttgatgagcccacaaatcatcttgatctggaagcatgtgtgtggctggaggaa
accctgaagaagtttgaacgcatacttgttgtgatctcgcactctcaagactttctgaat
ggcgtctgcaccaacataatccatatgcaaaataagaaattgaagatgtacactggtaat
tttgaccaatatgttcagacccgatccgaactagaagagaaccagatgaaacaatataaa
tgggagcaggaccagattgcttctatgaaagagtacattgctcggtttggccatgggtcc
gctaagctcgcccgccaggctcagagcaaggagaagaccctagccaaaatggagcgtggc
gggctcacagaggtggtcacgagagacaaggttctggtcttccaatttactgatgtgggc
aagctcccgccacccgtcctacagtttgtggaagtttcttttggttacacacccgataac
ctcatctacaagaatcttgactttggggttgaccttgactcacgggtagcgttggtggga
cccaatggagctgggaagagcacgctgctgaagctgatgagcggagaactagttccgctt
gacggcatggtaaggcggcacaaccacttgaggatcgctcaattccaccagcacttagcg
gaaaaacttgacctggaaatgtcggctttggcttatatgatgagcgagtacccgggaaac
gaagaggagaagatgagggcagccatcggcaggtttgggctgacggggaaagcacaggtg
atgccaatgaagaatctttcagacggacaaagaagccgtgtgatattttcgtggttagcg
tataggcaaccacacatgctgcttttggacgagccaactaaccatttggatatcgagaca
atcgactcgctggctgatgcactgaatgagtgggatggcggaatggtgctggttagccac
gacttccggctcataaaccaggttgcgcacgagatatgggtgtgcgagaatcaagccgtg
actcgatggcaaggtgatataatgggtttcaaggagcacttgaggaggaaggctgatcca
agtggttag
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