Cynara cardunculus var. scolymus (artichoke): 112519204
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Entry
112519204 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
ccav03015
mRNA surveillance pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112519204
09122 Translation
03013 Nucleocytoplasmic transport
112519204
03015 mRNA surveillance pathway
112519204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112519204
03041 Spliceosome [BR:
ccav03041
]
112519204
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112519204
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112519204
Spliceosome [BR:
ccav03041
]
Complex C
Other components
EJC/TREX
112519204
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112519204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
112519204
NCBI-ProteinID:
XP_024982969
LinkDB
All DBs
Position
LG 10:28497276..28503421
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AA seq
430 aa
AA seq
DB search
MGETEMKDNDTYEEELLDYEEDDEKAPDSAGVKVNGEAVKKGYVGIHSSGFRDFLLKPEL
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA
LVLCHTRELAYQICHEVERFSTYLTDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRI
LALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS
VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV
NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQERFEVDIKELPE
QIDTSTYMPS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagacagagatgaaggataacgatacgtacgaagaagagcttctagactacgag
gaggacgacgagaaagcccctgactccgctggtgttaaagtcaatggtgaagccgttaaa
aaggggtacgttggaattcatagttctggattcagagactttcttctaaagccagagctg
ctccgtgctattgtggattcagggtttgagcatccttctgaagtgcaacatgaatgtatt
cctcaagctattttgggtatggatgtcatctgtcaagcaaagtctggtatgggcaaaact
gccgtctttgtcttgtcaacattgcagcagattgaacctgttgcgggccaagttgctgcc
cttgttttatgtcacacaagggagttggcttatcagatctgtcatgaggttgaacggttc
agcacttacttgactgatatcaaggttgcagtcttctatggtggtgttaacatcaaaatt
cacaaggatcttctgaaaaatgaatgccctcatattgttgttggaacacctggaaggatt
cttgcacttgccagagacaaagaccttgcattgaagaatgtgaggcacttcatacttgac
gagtgtgacaagatgctcgagtcacttgacatgaggagagacgtgcaagaaattttcaag
atgactcctcatgataaacaagtaatgatgttttctgcaacgctgagcaaggaaatccgc
cctgtgtgcaaaaagtttatgcaagatccaatggaaatttatgtggatgatgaagccaag
ttgacgctacatggtcttgtacagcactacatcaaactgagcgagctggagaaaaaccgt
aaactgaatgatctgcttgatgcattagatttcaatcaagttgtgatatttgtcaaaagt
gtaagcagagctgcagagctgaacaagttgcttgttgagtgtaattttccttctatttgc
atccactctggcatgtcccaggaagaaaggttgacgagatacaagggtttcaaggaaggg
cacaagagaattctagtggcgactgatttagttggtcggggtattgacattgaacgtgtt
aatattgtcattaactatgacatgccagattctgctgacacttacctccaccgggttggc
agagctggtaggtttgggaccaagggacttgcaatcacatttgtatcatctgcagctgac
tcagatgttcttaatcaggttcaagagaggtttgaagtggatataaaagaacttcctgag
cagattgatacttcaacatatatgccttcttag
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