Cynara cardunculus var. scolymus (artichoke): 112519212
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Entry
112519212 CDS
T05604
Name
(RefSeq) chaperonin CPN60-2, mitochondrial-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112519212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112519212
03110 Chaperones and folding catalysts [BR:
ccav03110
]
112519212
03029 Mitochondrial biogenesis [BR:
ccav03029
]
112519212
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112519212
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
112519212
Messenger RNA biogenesis [BR:
ccav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
112519212
Chaperones and folding catalysts [BR:
ccav03110
]
Heat shock proteins
HSP60 / Chaperonin
112519212
Mitochondrial biogenesis [BR:
ccav03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
112519212
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112519212
Exosomal proteins of other body fluids (saliva and urine)
112519212
Exosomal proteins of breast cancer cells
112519212
Exosomal proteins of colorectal cancer cells
112519212
Exosomal proteins of bladder cancer cells
112519212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
ChlI
Motif
Other DBs
NCBI-GeneID:
112519212
NCBI-ProteinID:
XP_024982978
LinkDB
All DBs
Position
LG_10
Genome browser
AA seq
579 aa
AA seq
DB search
MYRFATNLASKARVARNSTRQIGSRLSWSRDYAAKDIRFGVDARALMLRGVEELADAVRV
TMGPKGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGT
TCATVLTGAIFSEGCKSVAAGVNAMDLRRGISMAVDAVVTNLKSRARMISTSEEITQVGT
ISANGEREIGELIAKAMEKVGKEGVITIQDGKTLYNELEIVEGMKMDRGYISPHFITNQK
NQKCELEDPLILIHEKKITSINAVIKVLELALKKQKPLLIVAEDVESDALATLILNKIRA
GIKVCAIKAPGFGENRKANLQDLATLTGGELITEELGMNLENVELRMLGSCKKVTVSKDD
TVVLDGAGDKKSIEERCEQIRSAIESSTSDYDKEKLQERLAKLSGGVAVLKIGGASDTEV
GEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIRNALKT
PVHTIATNAGVEGSVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAA
SVSSLMTTTEAIVVELPKPAGEAAPAMGGGMGGMGGMDF
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttcgcaacaaatcttgcttccaaggccagggttgcaagaaatagcacccgc
cagattggaagtaggttgagttggagcagagactatgcagccaaagacatcagatttgga
gtagatgctagggctttaatgcttagaggagttgaagagcttgcagatgctgttagagta
actatgggtccaaaggggcgtaatgtggtaatcgagcagagctatggatccccaaaggta
acaaaagatggtgtaaccgtggcaaaaagcatcgagttcaaagacaaagtcaaaaatgtt
ggtgcaagccttgtcaagcaggttgctaatgccactaatgatgtggccggtgatggtact
acttgtgcaacggtccttactggcgcaatattttcagaaggctgcaaatcagtggctgct
ggtgtgaatgcaatggatcttagacgtgggatttccatggctgtcgatgctgtggtaact
aacttgaagagtagggctcggatgataagcacatccgaggaaatcacacaggtgggcaca
atttctgcaaatggagaacgagagatcggtgagctaattgcaaaggccatggagaaagtt
ggaaaagagggtgtcattacaattcaagatgggaagacattgtataacgaattagaaatt
gtcgagggaatgaagatggacagaggctacatatctccacatttcatcaccaatcaaaag
aatcagaaatgcgaactagaggaccctctcattttaatccacgagaaaaagattacaagc
attaatgcggtgatcaaagtattagagttggcactgaagaaacaaaagccgttactaatt
gttgccgaggatgtcgaaagtgatgcattggcgaccctaattcttaacaagatccgtgca
ggcatcaaggtttgtgccataaaagctccaggttttggagagaacagaaaagctaacttg
caggatcttgctactctcacaggaggcgagcttataaccgaagaacttggtatgaatctt
gagaatgtggagttgcgaatgcttggctcgtgtaaaaaggtcactgtatcaaaagatgac
acagttgtgcttgatggtgccggtgataagaagtctatagaggagcgatgtgaacagatt
cggtcagcaatcgagtctagcacctccgattacgataaggagaagttgcaagaaaggtta
gcgaagctttctggtggtgtggctgtactgaagatcgggggcgctagtgacactgaagtt
ggtgaaaagaaagatagagttacagacgctctaaatgctacaaaggcagctgtagaggaa
ggaatcgtacccggaggtggtgtcgcacttctttatgcatcaaaggagttggacaagtta
ccaaccgccaactttgatcaaaaaataggtgttcaaatcattcgaaacgcccttaagacg
ccggttcatacaattgctacaaacgctggggtcgaggggtctgttgtggttgggaagctt
ttggagcaggacaacactgaccttggatatgatgcagccaaaggtgaatacgtggatatg
gtgaaaagtggaattattgacccgctaaaagtgataagaacggccttggttgatgcagca
agtgtgtcctctttgatgacgaccaccgaagctattgtggttgaacttccgaagcctgcc
ggtgaagcggctccggctatgggcggcggtatgggcggtatgggcggcatggatttttga
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