KEGG   Cynara cardunculus var. scolymus (artichoke): 112519248
Entry
112519248         CDS       T05604                                 
Name
(RefSeq) SART-1 family protein DOT2-like
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112519248
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112519248
   04121 Ubiquitin system [BR:ccav04121]
    112519248
Spliceosome [BR:ccav03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    112519248
Ubiquitin system [BR:ccav04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112519248
SSDB
Motif
Pfam: SART-1
Other DBs
NCBI-GeneID: 112519248
NCBI-ProteinID: XP_024983036
LinkDB
Position
LG 10:26239795..26252500
AA seq 915 aa
MEQSDTRRGKSVEIRDQDDSPMGERWKGGYDHDGNDKSRDPKHRSKEKSRSSRREDKDHR
SRDREKAKITDASKERDKESKGYVKDHNRDRRKEDGDDREKDRTRDKVKENDREKYRDKD
RGKHKDREKEVEKDSELGQDKERGKEKSRDRERGTDKGKERTREKERDKNKDREKERETH
ADRDREKTRERVRDGDHDKDRSTGREKVSGKQHDDDHGGSKDLGKEDKLNSDSEDGQYRD
TSKHGIGSHRDKDATKILKHEADAEGEYAGSQQSASELQDRIMRMKEERLKKKSEGASDV
LSWVSKSRKLEDRRNAEKEKALQRSKMFEEQDNVTQGEDEDEVAACPHTSHDLAGFKVLH
GLDKVIEGGTVVLTLKDQSILAAGDINQEIDMLENVEIGEQKRRNEAYKAAKKKSGVYDD
KFNEEPGIEKIMLPQYDDPVVDEGVTLDERGSFGGEAEKKLEELRRRIDGASVNTRFEDL
TSSGKVSTDYYTSEEMLRFKKPKKKKALRKKDKLDIDALEAEARSAGLGTGDLGSRADGK
RQALKEEQERSEAEKRSNAFQSAYVKADEASKALRMEQTVSLQKEDEDNLVFGDDDDDLH
KSLQRARKVALKRQDDGTSSGIQSIAVLASSTTKNSDADSGNRVSGESQENKVVFTEMEE
FVWGLQLDEEAHDPDAEDVFMEEDVAPASSDQEQKGKDGGWEEVKDIVQDEKMADEEEEV
KPDKTIHENALGKGLSGALQLLKDRGTLKDTVEWGGRNMDKKKSKLVGLVNDNDDKKEIR
IERTDEYGRILTPKEAFRLISHKFHGKGPGKMKQEKRMRQYHEELKVKQMKNSDTPSFTV
ERMREAQSRMKTPYLVLSGHVKPGQTSDPRSGFATMEDFPGSLTPMLGDRKVEHFLGIKR
KSEPGNMGPPKKPKT
NT seq 2748 nt   +upstreamnt  +downstreamnt
atggagcagtctgatacgagacgtggcaaaagtgtcgagattagggatcaggacgactct
ccaatgggtgagaggtggaagggaggatatgatcatgatggcaatgataaatcacgagac
ccaaagcatcgtagtaaggagaaaagtaggagtagtcgaagagaagacaaggatcacaga
agtagagatcgagagaaggcaaaaatcactgatgcttcaaaagagagagacaaagagtct
aaaggttatgtgaaagatcataatagagaccgacgaaaggaagatggagatgatcgtgaa
aaggataggactagagataaggttaaagaaaatgatagggaaaaatacagagataaggat
cggggcaagcataaagatcgtgaaaaggaggtagagaaagatagtgagctagggcaggat
aaggagaggggaaaagagaagagcagggacagagaaaggggaactgacaaagggaaagag
aggacaagggaaaaggagagggataaaaacaaagatagggagaaagagagagaaactcat
gcggacagggacagagagaaaactagagaaagggtgagggatggagatcatgataaagat
aggtccacagggagagagaaagtgagcgggaagcaacatgacgacgatcatggtggaagt
aaagatctgggtaaggaggacaagctaaattcagattctgaggatggtcagtacagggat
acaagtaagcatggtataggttctcaccgtgacaaagatgccactaaaattcttaagcat
gaagccgatgctgaaggtgaatatgcaggatctcagcagtctgcatctgaacttcaagat
cgaattatgaggatgaaggaagaacgattgaaaaaaaagtcagaaggcgcttctgatgta
ttatcgtgggttagtaaaagccgaaagcttgaggataggaggaatgctgaaaaggagaaa
gcattgcaacgctcaaagatgtttgaggagcaggacaatgtcactcaaggagaggatgaa
gatgaagtggcagcttgtccgcatacatctcatgaccttgctgggtttaaagttcttcat
ggccttgacaaggtgattgaaggtggcacagttgttttgacactgaaagatcagagcata
ctcgctgctggtgacatcaaccaagagattgatatgcttgaaaatgtggagatcggtgaa
caaaagcggagaaatgaggcttacaaggcggcaaaaaagaaatctggagtttatgatgat
aagtttaatgaagagcctggaattgaaaagattatgcttccacaatatgatgatcctgtt
gtggatgagggtgtaactcttgatgaaagagggagctttggtggtgaagctgagaaaaaa
ttggaggagctccggagaaggatagatggtgcgtctgtgaacactcgctttgaagatctt
acctcatctgggaaggtctcaacagactattatactagtgaagagatgctaagatttaaa
aagcccaagaaaaagaaagcactgaggaaaaaagataagttggatattgacgcacttgag
gcagaagctcggtctgcagggttaggtactggagaccttggttcacgagctgatggaaaa
aggcaggcccttaaagaggaacaagaaagatctgaggctgaaaagagaagcaacgcattc
cagtctgcatatgtcaaggcagatgaagcatctaaagcactgcgaatggaacagactgtt
agtcttcaaaaggaggatgaagataatctagtatttggcgatgatgatgatgatctccat
aaatcattacaaagggcaagaaaagtagctcttaagaggcaagatgatggaacatcgtct
gggatccagtcaattgctgtacttgcttcttccactactaagaactcagatgcagactct
gggaaccgagtatctggagagtcacaagaaaacaaggttgttttcacagagatggaggag
tttgtatggggtcttcagcttgatgaagaagctcatgaccctgatgctgaagatgttttt
atggaggaggatgtagcaccggcatcatcagatcaagaacaaaaaggtaaagatggtggc
tgggaagaggtgaaagatattgttcaggatgaaaagatggcagatgaggaggaagaggtc
aaaccagataaaacaattcacgagaatgcacttggaaaagggttatctggtgcactccag
ctacttaaggaccggggcactcttaaagatacagtggaatggggtggccgaaatatggac
aagaaaaagagtaagcttgttggccttgttaacgataatgatgataaaaaggagatacgt
attgagaggacagatgaatatggaagaattttgactcctaaggaggcctttaggctgatt
tcacataaattccatgggaagggacctggcaaaatgaaacaagaaaagcgtatgcgacaa
tatcacgaggagctgaaggtgaagcaaatgaaaaattcagacacaccgtcatttactgtc
gagagaatgagggaagctcaatctaggatgaagacaccttatcttgttctcagtggccac
gtcaaaccagggcaaacaagtgatcctagaagtggttttgctacaatggaggacttccct
gggagcttgacacccatgcttggtgacagaaaggttgaacacttcttgggtataaagcgg
aaatctgagcctggcaatatgggaccgccaaagaagcctaaaacctga

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