Cynara cardunculus var. scolymus (artichoke): 112519294
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Entry
112519294 CDS
T05604
Name
(RefSeq) putative pectate lyase 21 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112519294
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112519294
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112519294
NCBI-ProteinID:
XP_024983112
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Position
LG 1:complement(4992872..4997475)
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AA seq
335 aa
AA seq
DB search
METTLPYADVDSRLRAMAGRAEGFGRFAVGGAHGPVHSVTSLADDGPGSLREACRRKEPL
WIVFEISGTIHLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECENIIICNLEFEGGRGHD
VDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRQSTDITVSSRCYFANHDKTMLIGADPSH
SGDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRNWGVYAICASVEAQIYSQCNIY
EAGQKKKAFEFYTEKAADKEEARSGLIISEGDLLLNGAQPCPLREANGERMFHPSEFYPI
WTMEPASDSLKHILHICSGWQSVPRPSEQGNALVT
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggagacaacgttgccatacgcggatgtcgattcacgcttgagagctatggccggtcgg
gccgagggttttggccgttttgcagtcggtggcgctcatggtcctgtgcattccgttaca
tccttggccgatgatgggccaggatcacttcgtgaagcatgtcgcaggaaagaaccatta
tggattgtctttgaaatttcaggcactattcatctgtcatcctacttgaatgtgtcatct
cataagactattgatggtcgtggccagcgtataaaactgtctggaaaaggtttacggcta
aaggagtgcgaaaatataattatatgtaacctggagtttgaaggtggtagaggacatgat
gttgatggtattcagattaaaccgaactcaaagcacatttggatagatcgctgcagcctg
cgtgactatgatgatggacttatagatataactagacaaagtacagacattacagtttcc
agcaggtgttacttcgcaaaccatgacaagacaatgcttattggagctgatccatctcat
agtggtgatagatgtattagagtgacaattcatcattgtttttttgatgggacacggcaa
agacatcctcgtcttcgatttgggaaggttcatctttacaacaattacaccagaaactgg
ggagtgtatgctatttgtgctagtgttgaagcacagatatactctcaatgcaacatctat
gaagcagggcagaagaaaaaagcttttgaattttatacggaaaaggcagcagataaggag
gaagcaaggtctggtttgataatctcagaaggggacttgctcttaaatggagctcaacca
tgcccattgagggaagccaatggagaacgcatgttccaccctagcgagttttatccgata
tggacaatggaaccagcttctgattcattgaaacacattcttcatatctgcagtggttgg
caatctgttccaagaccatctgaacaaggtaatgctcttgttacttga
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