KEGG   Cynara cardunculus var. scolymus (artichoke): 112519329
Entry
112519329         CDS       T05604                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    112519329
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccav04121]
    112519329
   03036 Chromosome and associated proteins [BR:ccav03036]
    112519329
Enzymes [BR:ccav01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     112519329
Ubiquitin system [BR:ccav04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112519329
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     112519329
    Noncanonical PRC1 (PRC1.1)
     112519329
    Noncanonical PRC1 (PRC1.3/1.5)
     112519329
    Noncanonical PRC1 (PRC1.6)
     112519329
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-rbx1 zf-RING_6 zf-Nse zf-C3HC4_5 zf-RING_10
Other DBs
NCBI-GeneID: 112519329
NCBI-ProteinID: XP_024983148
LinkDB
Position
LG 10
AA seq 475 aa
MPAQKRSHEARYEDDDDDVDLQRNNPNIPEESEEDDDAEDVEQDEQAESDDDGSASSSCS
DKDEFYFIRDGCCSFVLVKLAEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRL
GNNECPACRAHCASRRSLRDDPNYDALIAVLYPDIDKYEAEEFAFHEEEKARNKQLPAQI
QASIAQTSRRQLEALGKKRTTAKATAAVFMRRSQGNTRNLRGRRNHKSSEPQGSDNEDDA
DNNDGGKFSSDADEPSSELRPKRHKRWRGARSSQPSLPSSSADGGCDENEVEGTRDMTGI
SAGLVGSSEILAWGRGGMRSHTRHGSLSNSAGKSARNSRLSKLIDHLRKLPQNNDKLDIH
LKLISLDEQNIPNLQHLYLCCSPTMSIIHVSQYVALEKGLQDDEIELLLVKGDHFEINHS
ASLKVPTGEQPEPAVINPLTDELQLLEEHQTLLDVAKGSAQKDLTLAYRKKSCSS
NT seq 1428 nt   +upstreamnt  +downstreamnt
atgccggcgcaaaagcgttcgcacgaagctcgttatgaggacgatgacgatgatgttgac
ctgcaacgtaataatccgaacattcccgaggaatccgaagaagacgacgacgccgaagac
gtagaacaagatgaacaagcagaatcggatgatgatggaagcgcttcctctagttgcagc
gacaaggacgaattttactttattcgggatggttgttgcagttttgtcctcgtaaagctg
gctgaaattcgcaaggaggtgcaatgcccaatttgtttaggtataattcggaagaccaga
acggttatggaatgcctgcaccgcttttgtagggaatgcatagacaaatcaatgagactg
gggaacaatgaatgccctgcttgtcgtgctcattgtgcaagtcgtcgttctctgagggat
gatcccaactatgatgccctgatcgcagttttgtaccctgacattgataaatatgaagca
gaggagtttgcctttcatgaagaggagaaagctcggaataagcagttacctgcacagatc
caagcttcaattgcccagacttctcgccgccaattagaagcactgggaaagaagcgtaca
actgctaaagccactgctgctgtgtttatgaggagatcacagggaaacacacggaatctc
aggggaaggagaaatcataaatcttctgaaccacaaggatctgacaatgaggatgatgct
gataacaatgatggaggaaaattttcctctgatgctgatgaaccatcttcagaattaaga
ccaaagagacacaagagatggagaggagcgcgatcttctcaaccttcactaccttcaagt
agtgctgatggaggctgtgatgagaacgaggtagaaggtaccagagatatgacaggcata
tctgctgggcttgttggcagttcagaaattctagcctggggtcgaggtggcatgagaagt
cacacacgccatggtagcctaagcaatagtgctggcaagagtgcaaggaacagtcgcctc
tctaagctgattgatcatcttcgaaaattaccacaaaacaatgacaagctggatatccat
ctcaagctcatctccttggatgaacaaaatatacccaatctgcaacacctatacctttgc
tgcagcccaactatgtcaattatacatgtaagccagtatgttgctcttgagaaaggtttg
caagatgatgagatcgaactgctgctggtgaagggggatcattttgaaatcaatcattca
gcatccttaaaagttcctactggagaacagcctgagcctgctgttataaatcctttgaca
gatgagttgcaattgttggaagagcatcaaaccttgttggatgttgcaaaagggtcagct
cagaaagatctgactcttgcttacaggaagaagtcgtgtagctcgtga

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