KEGG   Cynara cardunculus var. scolymus (artichoke): 112519458
Entry
112519458         CDS       T05604                                 
Name
(RefSeq) splicing factor U2af small subunit B-like
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112519458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112519458
Spliceosome [BR:ccav03041]
 Complex A
  U2 snRNP components
   U2 related factors
    112519458
 Complex B
    112519458
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_DUS3L zf-CCCH_4
Other DBs
NCBI-GeneID: 112519458
NCBI-ProteinID: XP_024983352
LinkDB
Position
LG_10
AA seq 327 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
GVDPQGQPLDPSKIQDHFEDFYEDLFEELGKYGEIESLNICDNLADHMVGNVYAQFREEE
HAAAALQNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISKEL
RRQLFGRRRRSRSRSRSPQRNRNYDERPQGGGRGSGRRGGGYSDHRSHDSRGRRPRSRSP
GRRGAGRSRSPGGKRNRSPVREGSAERRAKIEQWNREKEQSKTGPKTASSNENNDGINDD
GAPQNGDHYYEPHQEKQPQQDDGGYDY
NT seq 984 nt   +upstreamnt  +downstreamnt
atggcggagcacttggcgtccatattcggtacggaaaaagatcgagtcaactgtcctttc
tacttcaagatcggagcttgtcggcatggagaccgatgctcaaggctccataccaaacca
agcatcagccctaccctattgctgtccaacatgtaccagcgtcccgatatgatcactcca
ggtgttgatcctcagggtcagccccttgaccctagcaaaatccaggatcacttcgaggat
ttttatgaagatctgtttgaagagctgggaaaatatggagagattgaaagcttaaacata
tgtgataatttggctgaccatatggtggggaatgtatacgcacagtttagggaagaagaa
catgctgcagctgctcttcagaatctaagtggaagattttacgcaggccgccccattatt
gtggacttctctccagtgacagattttcgtgaagctacgtgtaggcagtatgaagaaaat
gtatgcaatagagggggttattgcaacttcatgcatcttaaaaagattagcaaagagttg
aggaggcagttatttgggagacgtaggagaagtcgaagcagaagccgtagtcctcaaagg
aatcggaattatgacgagcgtccacaaggtggtggtcgtggttctgggagaagaggaggt
ggttactctgatcatcgtagccatgacagtaggggcaggaggccgagaagtaggagtcct
ggacgaagaggagcggggcgtagcagaagccctggagggaagagaaaccgaagtccagtt
agggaagggagtgctgaaagaagggcaaagatcgaacaatggaacagagaaaaagaacaa
tcaaaaacaggtcctaaaactgcttccagtaacgaaaataatgatggcatcaatgatgat
ggtgctccacagaatggagaccattactatgaaccgcatcaggagaagcagccgcagcaa
gatgatggaggttatgattactga

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