Cynara cardunculus var. scolymus (artichoke): 112519463
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Entry
112519463 CDS
T05604
Name
(RefSeq) cell division control protein 48 homolog D
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112519463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112519463
03009 Ribosome biogenesis [BR:
ccav03009
]
112519463
04131 Membrane trafficking [BR:
ccav04131
]
112519463
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112519463
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112519463
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112519463
Membrane trafficking [BR:
ccav04131
]
SNARE
SNARE associated proteins
Others
112519463
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112519463
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112519463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
NB-ARC
AAA_lid_PRS2_C
AAA_24
Vps4_C
TsaE
NACHT
Zeta_toxin
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
112519463
NCBI-ProteinID:
XP_024983362
LinkDB
All DBs
Position
LG 10:complement(26491401..26495452)
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AA seq
808 aa
AA seq
DB search
MSNQPESSDSKGTKRDFSTAILERKKAANRLVVDEAINDDNSVVALHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFMEAYRPVRKGDFFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSDDVDLEKISKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDESIDAEILNSMAVSNEHFSTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSQGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQI
FKSALRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSEN
PEAMEEDMEDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAE
TSGAGAAAGGSDPFAAAAGAADEDDLYN
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcaacctgaatcatccgattccaaggggacgaagcgggacttcagtaccgcc
attctggagcggaagaaggcggcgaacaggctcgtagtcgatgaagccatcaatgatgat
aactccgttgttgccttacatcctgagactatggaaaagcttcagctattcagaggcgac
actattttgatcaagggaaagaaaaggaaagatacaatctgtatcgctcttgctgatgac
acttgtgatgaaccaaagattaggatgaataaggttgtcaggtctaacttgagggttagg
cttggtgatgtggtctctgttcatcaatgtgctgatgttaaatatgggaagcgtgttcac
attctcccggttgatgatacaattgagggcgttactgggaatctctttgatgcttacttg
aaaccatacttcatggaggcataccggccagtgaggaagggtgacttctttcttgtaagg
ggaggaatgagaagtgtagagttcaaggttattgagactgatccaccagagtattgtgta
gttgcccctgatacagagatcttctgtgaaggtgagcccgtgagaagggaggatgaggat
cgtttggatgagattggttatgatgatgttggtggtgttcgcaaacagatggcacagatt
cgtgagctagttgagctgccattaaggcacccacaactctttaagtcaattggggttaag
ccaccaaagggaattctgctgtacggtcctcctggatctgggaagactttaatagcccgt
gcagttgccaatgaaactggtgcgttctttttctgtatcaatggtccagaaatcatgtca
aagttggccggagaaagtgagagcaatctcaggaaagcgtttgaggaagcagagaagaat
gctccatccatcatctttattgatgagatcgattcaattgctcctaaacgtgagaagaca
catggagaagttgaaaggagaattgtttcacagcttttgactctcatggacggactgaaa
tcccgagctcatgttattgttatgggtgccactaaccgtcctaatagcattgaccctgcc
cttaggagatttggtagatttgacagggaaatcgatattggtgtgcctgatgaaattggc
cgtcttgaggttcttcgtatccataccaagaacatgaaactgtctgatgatgttgacttg
gaaaagatttcgaaagagacacatggatatgtgggtgctgatttggcagctttgtgtacc
gaggctgcactccaatgcatccgagagaaaatggatgtgattgatttggaagacgagtcc
attgatgcagagattctcaattccatggctgtttcaaatgagcacttttcgaccgccctt
ggtacaagcaacccgtctgcgcttcgtgagactgttgttgaagtaccgaatgtcagttgg
gaagatatcggaggccttgagaatgttaaaagagaacttcaggagactgttcaatatccg
gtcgaacatccagagaaattcgagaagtttggtatgtcaccctctaaaggggttctcttc
tatggtccaccagggtgtggaaaaactcttcttgccaaggctattgccaatgaatgccag
gccaatttcatcagcatcaagggtcctgaattgcttacaatgtggtttggtgagagtgaa
gctaatgttcgcgagattttcgacaaggcccgtggatctgctccttgtgtcctgtttttt
gatgaactcgattccatcgctacccagagagggagcagtcagggagatgctggaggtgca
gctgacagagttctgaatcaacttctgaccgagatggacggtatgtcggccaaaaagact
gtattcatcatcggtgctactaacaggcccgatatcatcgatcctgcacttttgaggcct
ggtcgtcttgatcagttgatatacatccctctccctgatgaggaatcccgctatcaaatc
ttcaaatcggctttgaggaaatctccggttgccaaagacgtagatctgaatgcccttgcc
aagtacacccagggattcagtggtgctgatatcacggaaatctgccagcgtgcctgcaag
tacgccattcgtgagaacattgagaaagatatcgagagggaaaagagaagaagcgaaaac
ccggaggctatggaggaggacatggaggatgaggtggcggagatcaaggcggcacacttt
gaggaatcgatgaagtttgcacgcaggagtgtgagcgatgccgacattaggaagtaccag
gcgtttgctcaaacactgcaacagtcgagagggtttggttctgagttcaggtttgcagag
actagcggagcaggggcggccgctggtggttccgacccttttgctgcggccgcaggtgca
gccgatgaagatgatctgtacaactga
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