Cynara cardunculus var. scolymus (artichoke): 112519681
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Entry
112519681 CDS
T05604
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1
KO
K15047
heterogeneous nuclear ribonucleoprotein U-like protein 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112519681
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112519681
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
hnRNP proteins
112519681
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
112519681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
SPRY
KTI12
Afaf
Motif
Other DBs
NCBI-GeneID:
112519681
NCBI-ProteinID:
XP_024983667
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All DBs
Position
LG 10:complement(1817950..1823001)
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AA seq
687 aa
AA seq
DB search
MASWMKRERSLADESPSTGKKPRVNYDGQSLTTSHRVVLNTADCDLDFDIEGDGLKGSAL
YEHGFAYCWSGARANIGITGGKYCFSCKVVSPQLVDMDDTPIDQKHLCRVGISRGDDKVG
NLGETEHSFGFGGTGKFSNAGKFSTYGEKFDIGDTILCAVDLESKPMASISFTKNGKWLG
TARHFNAGPTGLGVIDSPIKELHWESAVFPHVLLKNVVVQLQFSYEDGLVPQDGYRPWAS
AIEDGKGLLGPSFSDVYNCELIMMVGLPASGKTTWAERWVNDHPEKRYILLGTNLALDQM
KVPGLLRKQNYGERFDCLMDRATMIFNTLLTRASKTPRNFIIDQTNVYKSARKRKLKPFA
NFQKIAVVVFPRPEDLKARSAKRFREMGKEVPAEAVNEMLANFVLPKSKDMPGTDEYFDQ
VIYVELNMTESKRCLDEMKAKMQLGISVSPCSHQSSLQSYSSNPVRHSQENVLQPHRSSS
THQYPPESSTHFSHPTSGHYAQGNSLPTYDSPALQYQATPSGGNWQGSYPSQPILPNMHG
NEPSKGRFLPRDDFNHRRSYSGYEHRASAPMGFSDSYQRNSSYGARVEYHTPSNETMDLS
PRYTANVIHHGPPIERYATSSSFYDASGGPLSASGAPQVDMHTPTQSRFLPATSIPYGSA
YGTPDSMNPQGNYPPNYDGYQSRLRYY
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtggatgaagcgggaacgatctttagcagacgagagcccctcaacggggaag
aaacctagagttaattacgatggtcagtctctgaccaccagtcatcgcgtcgttcttaac
actgccgattgtgatctagatttcgacattgaaggagatggccttaaaggttctgcactt
tatgagcatggatttgcttattgttggtccggtgctcgtgccaacataggtataactgga
gggaagtattgctttagttgcaaagttgtctcgccacagctagttgatatggatgacaca
cccatcgaccagaaacatctctgtcgcgtgggcatctctaggggagatgacaaagtggga
aaccttggggaaactgagcacagctttggcttcgggggaactggaaaattttccaatgct
ggaaagttctccacttatggagaaaaattcgacattggggacacaattctttgtgcagtt
gatctggaaagtaaaccaatggcttcaatcagtttcaccaagaatggaaaatggctgggc
actgcaaggcattttaatgccggtccaactggtctaggagtgattgattcaccaatcaaa
gagctgcattgggagtcggccgtcttcccacatgtgctattaaaaaatgttgtggttcag
ttgcagttcagctacgaagatggtttggttccacaagatgggtacaggccatgggcatct
gctattgaggatggaaagggtttgttgggaccttcgttttcggatgtatataactgtgaa
ttaatcatgatggttgggttacctgcctctgggaagactacttgggcagaaagatgggtg
aatgaccacccagaaaagcgttatattctgctaggaacaaacttggctctggatcaaatg
aaggttcctggtctgcttcgcaagcagaactatggtgagcggtttgattgcttaatggac
cgtgcgactatgatatttaataccctgttaaccagggcttccaaaacaccacgtaatttc
attatagaccagacaaatgtctacaagagtgctcgtaagcgcaaattgaagccttttgct
aattttcagaagattgcagttgtggttttcccacggccagaagaccttaaagcccgcagt
gcgaaaagatttagagaaatgggaaaggaggttcctgctgaagctgtcaatgaaatgcta
gccaattttgttttgcctaagagcaaggatatgcctgggacagatgagtattttgatcag
gtcatatatgtagaactcaacatgacagagtcgaagagatgcttggatgagatgaaagca
aaaatgcaattaggcatcagtgtctctccttgttctcatcaaagttcactccagtcgtat
agtagcaatccggtgagacattcacaggagaatgtgttgcaacctcacaggagttcatca
acacatcaatatcctcctgaaagttctacccattttagtcatccaacttcaggtcattat
gctcaaggaaattctttgccaacatatgactcccctgcattacaatatcaagcgactcca
tcaggaggaaattggcaaggttcttatccatctcagcctatattgcctaatatgcatggg
aatgaaccaagcaaaggcagatttctccctagggatgattttaatcaccgtcgcagttac
agtgggtatgaacatagagcatcggctcctatgggattttctgactcttaccagagaaat
tcatcctatggagctcgcgtcgagtaccatactcccagtaatgaaaccatggatttatct
cctaggtacactgcaaatgtgattcaccatggcccccctatagaacgctatgcaacaagt
tcatctttctatgatgcctctggtggacccctgtctgcctctggtgcgccccaggttgat
atgcacactccaacccaatccagatttctgcctgctacatcaattccttacggttctgct
tacggaactccggattcaatgaacccgcaaggaaattacccgccaaattacgatggatat
cagtctcgtttaaggtactactga
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