Cynara cardunculus var. scolymus (artichoke): 112519714
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Entry
112519714 CDS
T05604
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Module
ccav_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112519714
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
112519714
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
112519714
NCBI-ProteinID:
XP_024983721
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Position
LG 10:20446545..20448024
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AA seq
392 aa
AA seq
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MSIRLLVALITIIVFLEETTAAATYNVKSFGAKPNGRTDSTKPLMSAWSAACGSSKPATI
FVPKGRYVVGGLRFRGPCKNRAITIRIDGTLMAPSNYGVLGDADYWLLFHGVDGVTIQGG
TLDAQGAGLWACKSSNSKNCPSGATSLAISNSNNVVVNGLSSLNSQMFHIVVNGCRNVRM
VGVNVVAPWDSPNTDGIHVQLSTGVTILNSKLSTGDDCVSVGPGATNLWIENVACGPGHG
ISIGSLGKDLKEAGVQNVTVKRVTFKGTQNGLRIKSWARPSSGFVNGVLFQNAIMTDVQN
PIVIDQNYCPGSINCPDQVSGVKISNVKYEDIHGTSATKVAVKFDCSKKSPCRGITMQDV
NLSFKNQLLSASAYCVNAGGKASGVIKPTSCL
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtccatccgtctccttgtcgccctcatcaccatcatcgtcttcctcgaagaaacaacc
gccgccgccacatacaatgtgaagagcttcggagccaaaccaaacggaagaacagactca
accaagccgcttatgagtgcatggtcagctgcttgtggctcgtcgaagccagccacgatt
ttcgtcccaaaaggaaggtatgtggttggtgggttacgtttcagagggccatgcaagaat
cgagccatcaccattcgtattgatggcacgcttatggctccttccaattatggtgttctt
ggtgacgccgactactggcttcttttccatggagttgatggggttacgattcagggtgga
accctagatgctcaaggtgctggtttgtgggcttgtaagtcgtccaactccaagaattgc
cccagtggagccacgagtttagcgatttcgaactcgaataatgttgtggtgaatggattg
agttcattaaacagccagatgtttcacatcgtggtgaacggttgccggaatgtgaggatg
gtgggggtgaacgtggtggcgccatgggacagccctaacaccgacggcatccacgtccag
ttgtccaccggagttaccatcttgaactccaaactcagcaccggcgatgactgtgtttcc
gttggccccggtgccaccaatctctggatcgagaatgtcgcttgtggaccaggccatggc
atcagcattggaagcttagggaaggacttaaaagaagcgggagtgcaaaacgtgacggtt
aaaagggtaacttttaaaggaacacagaatgggttgagaataaaatcatgggcaaggcca
agcagtgggttcgttaatggcgttctcttccagaatgccatcatgaccgacgtccagaac
ccaatcgttatcgatcaaaactactgtccaggtagcattaactgccccgatcaggtttcc
ggcgtgaaaataagcaacgtgaagtatgaagacattcatggaacatctgctacaaaagtg
gcggtgaagttcgattgcagcaaaaagagtccatgtaggggaatcacgatgcaagatgtg
aacttgagcttcaagaaccagttactttctgcgtctgcatattgtgtgaacgccggagga
aaagcttccggcgtgattaaaccgacaagctgtctgtag
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