Cynara cardunculus var. scolymus (artichoke): 112519746
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Entry
112519746 CDS
T05604
Name
(RefSeq) protein argonaute MEL1-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112519746
03036 Chromosome and associated proteins [BR:
ccav03036
]
112519746
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112519746
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112519746
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
112519746
microRNA pathway
RISC loading complex
112519746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
112519746
NCBI-ProteinID:
XP_024983761
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Position
LG_10
Genome browser
AA seq
985 aa
AA seq
DB search
MSARGRGSGDPTGAGGGRGRGRGRGRGRGGGQQPPVSSQNIGGRGNAGQSGPRVAVQQTP
MVRDFENLAIGSPATTSEPVVATATAAGPVRQQPMQQLPVQTSPEAMVASQQQAAPAAPS
QAVPLVPSSSKMIKAPARNGFGTVGRKCVIRANHFLVDIGQKDPHQYDVTIAPEVTSKSK
CREIMKFLIDSYRASHLGNLLLAYDGKKSAFAAGALPFESKEFVVKIAENNGREREFKVT
IKFAARKDVHHLRQFLSGRQPDCPQETIQALDVVLRESASQGREIVGRSLFSCEFGHGSL
GDGIEFWKGFYQSLRPSQMGLSLNVDMSARAFYQPMLVSEFVSEFLNKDITRPLSDQERI
KVKKALRGVRVEVRRQDYMRRYKVQGLSVQPTNQLTFPVDTTGETVSVVRYFYEKYGLRL
NYPHLPAIQAGTDAKPTYLPMEICRLAGGQRYTLKLNENQVTKLLRNTCQRPREREENIM
RIIQSNGYNKDKLVSEDFGMRVREQLTSIDARVLPPPNLRYYGSGPGSEVEPAVGQWNMI
NLKMINGGTVNYWAIVNFSRQRQEAVERFWKGIVTMCQNKGIVFNPQPLLPMVSAPAHSI
EKALVDIQSGCSAKLAAEVAPGKQLQLLFVILPEAKGTYARIKRVCETELGIVSQCCKPQ
NVVKLSQQYFENVALKINVKVGGRNTVLSAALNNRLPYITERPTIIFGADVTHPSPGEDS
SPSIAAVVASMDWPHVTKYKALVSAQPHRQEIIQDLYTTCSDSKRGVVHAGLIRELLISF
KKATGHKPHRIIFYRDGVSEGQFNEVLLSEMDQIRRACVSLEEHYLPPVTFIVVQKRHHT
RFFPARHGDRQSTDKSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDE
NKFTADGLQLLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGEFSDSGSHGQRA
TRERVAEVRPVPVIHENVKSVMFYC
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaagaggccgagggagcggcgatccaaccggtgctggtggtggccgcggacga
gggcgaggacgagggcgagggcgtggtggtggacaacagccgccggtttcttctcaaaac
atcggtggaagaggaaatgctggacaatccggccctcgtgttgccgttcaacagacaccg
atggtgagagattttgaaaatcttgcgataggttcaccggcgacgacatcagaaccggtc
gttgctacggctactgcggcaggtccagttcgccagcagccaatgcagcaacttcctgtt
cagacatcgccggaagcgatggtagcctcgcagcaacaggcggcaccggcggctccttct
caggccgtaccgttggtgccttcgtcgtcgaagatgattaaggcaccggctaggaatggt
tttggaactgttgggagaaaatgtgttattagggcaaaccattttcttgttgatatcggg
caaaaggatccgcaccagtacgatgtgacaattgctcctgaggttacttcaaagagtaaa
tgtcgagaaatcatgaaatttcttatcgattcatatcgggcttcacacttgggaaatttg
ttgttggcatatgacgggaagaaaagtgcatttgctgcaggggcactgccttttgaatct
aaagagtttgtagttaagatagctgagaacaatgggcgggagcgcgaattcaaagtcact
ataaaatttgctgccagaaaagacgttcaccatctgaggcagtttttaagtggcagacag
cctgattgtccacaagagactatccaagctcttgacgtcgtattgagggagtctgcttct
caaggtcgcgagatagttgggagatcgttgtttagttgtgagtttggccacggttccctt
ggtgatggaatagagttctggaaaggattctatcagagtctcagaccatcccaaatggga
ctctcactaaatgtcgatatgtcagcccgggcattttatcaaccaatgttggtttctgaa
tttgtatcagaattcctcaacaaagatataacaagaccactctcagaccaagaacgtatt
aaggtgaaaaaagctttgagaggtgtcagggtggaagttcggcgccaggattacatgagg
cgctataaggttcaaggattatcagttcaaccaaccaaccaactaacctttcctgttgat
accactggagaaactgtatctgttgttcggtatttctatgaaaagtacggcttacggctt
aactatcctcaccttcctgcgatacaagctggcacagatgcaaaacctacatatctgcca
atggagatttgtaggcttgctggtggtcagaggtatactttaaagctcaatgaaaaccag
gtgaccaaacttctaaggaacacgtgccagcgcccacgggagagggaagagaatatcatg
aggatcatacaaagcaacggatataacaaagataagcttgtcagtgaggactttggaatg
agagtgagagagcaactcacttcaatagatgctcgagttcttccacctccaaatctcagg
tattatggttcaggtcctggatcagaagttgagccagcagttggccaatggaatatgatc
aacctgaaaatgatcaatggaggtactgtcaattattgggcaatagtcaacttttcaagg
cagaggcaagaagcagttgagcgcttttggaaaggaatagttacaatgtgtcaaaataaa
ggaatagttttcaatccccaacctctgcttccgatggtttctgcgccagcacatagtatt
gagaaggcactggttgacatccaatctgggtgttctgcaaaactagcagcagaggtcgca
ccaggcaaacaactacaattgttgtttgtcattcttccagaagcaaaaggaacttatgca
aggatcaaacgagtgtgtgaaacagagctgggaattgtttctcaatgctgtaaaccacaa
aatgttgtgaagctcagtcagcagtattttgaaaatgtagctcttaagattaatgttaag
gtagggggaaggaatacggtgctgtctgcagctctcaacaatcggcttccttacataact
gagcgtccaaccataatttttggagctgatgtcacgcatccatcaccaggagaggattcc
agcccttccattgctgctgtggttgcttcaatggattggccccatgttacaaaatacaaa
gcgttggtctctgcacaaccacacagacaagaaattattcaggatctttatacaacttgt
tcagattcgaaaaggggtgttgttcatgcaggcttgattagggagcttctgatatctttc
aagaaagcaactgggcataaacctcacaggattatattttatagagatggtgttagtgaa
ggacagtttaatgaggttttgctgagcgaaatggaccaaattcgtagggcatgcgtatca
ttggaggagcactatttgccgcctgttacgtttattgtggttcagaagagacatcataca
agattctttcctgcaaggcatggtgataggcaaagcaccgacaagagcgggaatattctt
cctgggactgtggtggacacaaagatttgtcatccaacagaatttgatttctacctgtgt
agccatgctggtattcagggaacaagtcgtccaacgcactatcatgtgttgtatgatgaa
aacaagtttaccgctgatggattgcaattgctgacgaacaatttatgctacacatatgca
aggtgtaccagatctgtctccatcgtgcctcctgcatattatgcacatttggctgcattt
cgagctcggtactacatggaaggtgagttttctgatagtggatcacatgggcaacgtgca
acaagggagagggtggcggaagtgaggcctgtcccagtgattcatgaaaatgtgaagagt
gtgatgttttactgttaa
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