KEGG   Cynara cardunculus var. scolymus (artichoke): 112519751
Entry
112519751         CDS       T05604                                 
Name
(RefSeq) RNA-binding protein Y14A-like
  KO
K12876  RNA-binding protein 8A
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013  Nucleocytoplasmic transport
ccav03015  mRNA surveillance pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112519751
  09122 Translation
   03013 Nucleocytoplasmic transport
    112519751
   03015 mRNA surveillance pathway
    112519751
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112519751
   03041 Spliceosome [BR:ccav03041]
    112519751
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     112519751
Spliceosome [BR:ccav03041]
 Complex C
  Other components
   EJC/TREX
    112519751
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_3
Other DBs
NCBI-GeneID: 112519751
NCBI-ProteinID: XP_024983764
LinkDB
Position
LG_10
AA seq 204 aa
MANAADVDALDFEPDDDDLMDEDAAVDVDASSPRTSTPIPKLKSAITGGAVTVASSIPKK
TKGRGFREETDAERNNRMSGRFDSLDSDGGPGPERSIEGWIILVTGVHEEAQEDDLQNAF
GEYGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAIAAMDGGELLTQTVNVDWAFSKG
PFRRRNNRRRSPRGHRSRSPRRRF
NT seq 615 nt   +upstreamnt  +downstreamnt
atggcgaatgctgccgacgtagatgcgctggattttgagcctgatgacgatgatctcatg
gacgaagatgccgctgttgacgtcgacgcctcttctccgagaacttccactccaatccct
aagcttaaatcggccatcactggtggcgctgtcaccgttgcttcttctattcctaagaaa
actaaaggacgtggattccgtgaagaaaccgatgccgaacgtaataatcgtatgtctggt
cgttttgattctctcgattcagatggcggccccggtcctgaacgatcaattgaagggtgg
attattctggttactggagtacatgaagaagcccaagaggatgacttgcaaaatgcattt
ggggagtatggggagattaagaacttgcatttaaatcttgatcgccggactggttttgtt
aagggctatgcgctgattgaatatgaaaactttgaggaagcggagaaagccatagctgca
atggatggaggtgaactgctgactcaaacagtcaatgttgattgggcattcagcaaaggt
ccttttagaaggagaaacaataggaggagatcacctcgtgggcatcggtcaagaagtcca
aggaggagattttga

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