Cynara cardunculus var. scolymus (artichoke): 112519904
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Entry
112519904 CDS
T05604
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03440
Homologous recombination
ccav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112519904
03460 Fanconi anemia pathway
112519904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccav03032
]
112519904
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112519904
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
112519904
DNA replication proteins [BR:
ccav03032
]
Eukaryotic type
DNA Topoisomerases
112519904
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
112519904
FA (Fanconi anemia) pathway
112519904
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF
Zn_ribbon_GRF_2
zf-C2H2_10
zf-CCHC
HVO_A0261_N
Motif
Other DBs
NCBI-GeneID:
112519904
NCBI-ProteinID:
XP_024983987
LinkDB
All DBs
Position
LG 10
Genome browser
AA seq
907 aa
AA seq
DB search
MAGGGGGGRAIRVLNVAEKPSVAKTVSGILSRNQGLRMREGRSRYNKVFEFNYTIQGQPC
QMLFTSVTGHLMEIEFEGRYRKWHACDPVDLFQAPIQKHVPEDKLDIRKTLEEEARKCQW
LVLWLDCDREGENIAFEVVEVCSNVNSRLNIWRARFSSLIEREIHQAAQQLVRPNQLFSD
AVDVRQEIDLRIGASFTRFQTMLLKDAFVFNFSTDGRNLVLSYGPCQFPTLGFVVERYWE
IQAHEPEEFWKIQCSHTTDEGTATFNWIRGHLFDYTCAVLLYEMCVQEPVATVTKVRQQE
RLKYPPHPLNTIELEKRASRYFRMSSEQTMKIAEDLYQSGFISYPRTETDSFSARTDLHI
LVQEQQEHPVWGPYAQRLLDPSSGLWRNPSGGGHDDKAHPPIHPTKFSPGQSGWSEDHRK
LYELVVRHYLACVSQPAVGAETTVEIDIAGEMFSALGRTIVARNYLEVYRFDSWGGSLIP
NYTFGQQFTPTSLTLDSGTTRPPPLLSEADLLDCMDKAGIGTDATMHDHIKKLTDRFYAT
KESSHFRPTNLGEALVMGYDDMGYELWKPYLRSMMEEDMKAVSVGNKRKAEVLATCLQQM
KACFLDARLNKVKLFQALEIFFDRTNRTGGDEQHNIGELVRRCDVCEDSDLVLRKKPDGK
FMIGCMAFPQCRNAIWLPGSISEAAVTTTVCNVCTPGPIFKIQFTFRRLEIPPDFSVHHL
GCVGGCDDIMRELMEISASAHRNFSSVPARGRGTTASSRNNSPNNQPQSTCSFCHQTGHS
SSDCYSLTSQSRSAQSQGGNSHNGDSLIPCSTCGSPCLLKTANTENNRGRKFYSCQTQGC
KFFVCWEDSVPTTTTSRRGDRGRGGGANGSDVRFVSATGDPVSGRSCFICGDPSHFANVC
PNRGIRN
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggcgggggcggagggagagcaatcagggtgctgaatgtggcggagaagcct
tcggtggcaaagacggtatcaggaatattgtcgagaaaccaggggttgagaatgcgagag
gggaggtcaaggtacaacaaagtgttcgagttcaattacacgattcaagggcagccttgt
caaatgctgttcacttccgtcaccggacatctcatggagatagaattcgaaggccgctat
cggaagtggcacgcttgcgaccccgttgatcttttccaagcacctattcagaaacatgtc
cccgaggacaagttagacatcagaaagaccttggaggaggaagccagaaaatgccagtgg
cttgtcttgtggcttgattgtgatcgagaaggagagaacattgcatttgaagttgtggaa
gtttgctcgaatgtgaattctcgtctcaatatttggagagctcgtttctcttcattaatc
gaaagggaaatccaccaagctgcccagcagcttgtacggcctaatcaattgttttccgat
gctgtagatgttagacaagaaatagatctccgaattggtgcttccttcacgaggtttcag
accatgctactgaaagatgcatttgtttttaatttttctacagatggcagaaaccttgtt
ctaagctatggtccttgtcagtttcccacactgggatttgttgtggaacgatattgggag
atacaagcacatgaacctgaagaattttggaagatccagtgttctcacacaactgatgaa
ggcactgctacctttaattggatacgtgggcatctgtttgattacacctgtgcagtatta
ctttatgagatgtgtgtccaagaacctgttgcgaccgtgacaaaagtaagacagcaggaa
agactgaaatatcctccacaccctttaaacactattgagctagagaaacgagcatcacgt
tatttcaggatgagttccgaacaaaccatgaagattgcagaagacctttatcagtctggt
ttcataagctatccacgtacagagactgattccttttcagcaaggaccgacttgcatata
cttgtacaagagcaacaggagcatcctgtgtggggcccatatgcccagcgactcttggat
ccttcttcaggactctggaggaacccaagtggcggtggtcatgatgacaaagcccatcct
cccattcacccaacaaagttttcgcctggacaatctggatggagtgaggatcatcgtaag
ttgtatgagctggttgttcgtcattatttggcatgtgtttctcaaccggctgttggagct
gaaactacagttgaaattgacattgcgggtgagatgttttcagcattaggcaggacgata
gttgctagaaattatttggaagtctaccgattcgattcatggggtggatcactaatccca
aactacacatttgggcagcagttcactccaacatcattgactcttgactcagggactact
agaccaccacccctcttaagtgaagctgatcttttagattgtatggacaaggcaggcatt
ggcacagatgctacaatgcacgatcacatcaaaaagctaaccgatcggttttatgctact
aaagagtcgtcacatttcaggccaactaatcttggcgaggcattagttatgggatatgat
gatatggggtatgaactttggaaaccatatctccgcagtatgatggaggaggacatgaaa
gcagttagtgtaggcaacaagagaaaagctgaagttttggcaacttgcttacaacagatg
aaggcttgtttcttggatgccaggttaaataaagtgaaacttttccaagccttggaaatt
ttctttgacagaacaaatagaactggtggagatgagcaacataatattggagagcttgtg
cggcgatgtgatgtttgcgaggactcagatttggttcttaggaagaaaccggatgggaag
ttcatgattggctgcatggcttttccacagtgtagaaatgccatctggcttcctggatcc
atatcagaagcggctgttaccacaactgtttgcaatgtgtgcactccaggacccattttc
aagattcagtttacatttcgccggctggaaataccaccagacttcagtgtccatcattta
ggttgtgttggtggctgtgatgatattatgagagagcttatggaaatatctgcttctgca
catcgcaatttttcaagcgtaccagcaagaggacgaggaaccactgcatcttccaggaat
aattctccaaataatcaaccgcagagtacttgcagtttctgccaccagactggacattct
tcaagtgattgttactcactgacttctcaatcccgtagtgctcaatctcagggagggaac
tctcataatggcgattcattaattccttgcagtacgtgtggttcaccctgtcttttgaaa
actgccaacacagaaaataacaggggtcggaagttctactcttgtcagacacagggctgc
aaattctttgtatgttgggaggatagcgtccccactacaaccaccagcaggaggggtgat
cgtggccgagggggtggagcaaatggcagtgatgtgagatttgtatcggccacaggtgac
cctgtttctggcagaagctgctttatttgcggcgatccatcacattttgcaaatgtctgc
ccaaatcgtggcatacgaaactga
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