Cynara cardunculus var. scolymus (artichoke): 112519914
Help
Entry
112519914 CDS
T05604
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112519914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112519914
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
112519914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
OB_HELZ2
CSD2
Toxin_R_bind_C
OB_RNB
Motif
Other DBs
NCBI-GeneID:
112519914
NCBI-ProteinID:
XP_024984023
LinkDB
All DBs
Position
LG 1:17717202..17728987
Genome browser
AA seq
763 aa
AA seq
DB search
MLQSKSFVRKTKQGKVVKVVREHYLRDDIYCGASFCQVCDTKGARFSSPGSAILVVDTNV
VLNXIDLLENPAIDDVVVLSVVLEEVKNKNLAVYNRLRALCSNSLRRFFVFSNEHHKDTY
IKAMAGESPNDRNDRAIRVAAQWYQNHLGGATRILMITNDRENKRKAIDEGISADTVESY
VKSLGQPALLDLLVQPHSSEDMDIEDLRXSKKKVIYNEHKPMSEITSGIRCGIYHQGKLR
VNRYNPFEAYVGSESIGDEIIIFGRGNMNRAFDGDIVAVELLPQDQWHNEKSLSIAEEDD
EEDEGVHLAPSSADDAPRIANSAQGSVENAHIANSRPSGRVVGIIKRNWHAXCGSLEPMP
MPAGNAGIAHALFVSKDRRFPKIRIQTRQLGNLLDKRIIVAVDTWDCQSRYPSGHYVRTI
GDIGDRETETEVVLIENDIXARPFSSQVLACLPPLPWSVSAEDLSNPIRQDLRHLRIFSV
DPPGCKDIDDALNCTSLPNGNFEVGVHIADVTNFVHPGTPLDSEATQRGTSTYLVERRID
MLPKPLTEDICSLRADVERLAFSVIWEMTPDAHVISTRFTKSVIKSCAALSYVEAQARMD
DRCVKTQFCELRYIIKPIKREYFSMVYIHHIPQTLPLWFGLCYIWYYVSIYNNKSLSFNS
KETLCRRHPSPTKEMLEPLLRTAASVGLDLDVSSSKAFADSLDRAVGEDPYFNKLIRILA
TRCMXQAVYFCSGDLSPPEFHHYGLAAPLYTHFTSPIRRYAGN
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgttacagagcaagtcattcgtccggaaaacgaaacaaggcaaagttgttaaggtggtt
agagaacattatcttagagatgatatatactgcggagcctctttttgccaagtttgtgat
acraaaggtgctcgtttcagttcccctggctccgcaatccttgttgttgatactaatgtc
gttctgaatcwgatcgatttgcttgagaatccagcaattgaygatgtcgtggtgctctct
gtggtgttggaagaggtcaagaacaagaatcttgcagtttacaacagactgagggcctta
tgtagcaactccttaagaagattctttgtattttctaacgaacaccataaggacacatat
ataaaggctatggcaggcgagagtccaaatgatcgcaatgatagagctattagggttgca
gcgcagtggtaccagaaccatcttggtggtgccactagaatcttaatgatcacaaatgac
agggaaaataagagaaaggccattgacgagggaatttctgcagatacagtggagtcatat
gtgaaatcacttggtcagccagcactccttgatcttcttgttcaacctcactcctctgag
gatatggacattgaagatttgaggycttcaaagaagaaagttatatataatgagcataag
cccatgtcagagattacktctgggatacgctgtggaatataccatcaaggaaagcttcgt
gttaaccgttataatccatttgaagcatatgttggaagtgagagtattggtgatgaaata
ataatttttgggcgcggaaacatgaatagagcttttgatggagatatagtggctgttgaa
cttttgcctcaagatcaatggcataacgaaaagtctctttctatagctgaggaagatgat
gaagaagatgaaggtgttcacctagcaccaagcagtgctgatgatgctcccagaattgca
aattcagcacaaggatctgttgaaaatgcgcatattgctaattctcgtccttctgggcgt
gttgttggcattataaaacggaactggcatgcgtrttgtggatctctggagccaatgcct
atgcctgcaggtaatgctggtatagcccatgctctatttgtctccaaggatcgccgattt
cctaagatacgaatacaaactcggcaacttgggaatcttcttgacaaaagaattattgtt
gctgttgatacttgggattgccaatccagatacccttctgggcattatgttcgtacaata
ggagatattggagaccgggaaactgaaacagaggttgtgttaatagagaatgatatagaw
gcaagaccattctcctctcaagtcttggcatgcctgccaccattaccttggtcagtgtct
gcagaggatctgtcaaatcccatcagacaggacctgcgtcatttacgcatatttagtgtg
gaccctccaggatgcaaggacattgatgatgcattaaattgtacttcacttccaaatggg
aactttgaagttggagttcatattgctgatgtcacaaattttgttcaccctggaacaccc
cttgatagtgaagctacacaaagaggaacttctacctatcttgttgaacgccgcattgac
atgcttcccaaacctctyacggaagatatatgttctcttcgggctgatgttgagaggctt
gccttttctgttatttgggaaatgactcctgatgcacatgttatttctactagattcaca
aagagtgttatcaagtcatgtgctgctttgtcttatgttgaagctcaagctaggatggat
gacaggtgcgtgaaaacacaattctgtgaacttagatacatcataaagccaattaaaaga
gagtatttttctatggtatacattcaccatataccccagaccctacctctgtggtttggc
ttatgttacatatggtattatgtatccatttacaataataaatcactgtcttttaattct
aaagaaactctctgcaggcgccatcctagtccaacaaaagagatgcttgaacctttgtta
cgtacggctgcttctgttggcctcgatttggatgtatcatcatctaaagcatttgctgat
tcacttgatcgtgctgtgggtgaggatccatacttcaataagttgatccgtattctggca
acaagatgtatgkcacaggccgtttacttctgtagtggggatcttagtcctccagagttt
caccattatgggcttgctgcacctctatatacacatttcacgtcgccaattagaagatac
gctggtaactga
DBGET
integrated database retrieval system
