Cynara cardunculus var. scolymus (artichoke): 112520395
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Entry
112520395 CDS
T05604
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112520395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112520395
03041 Spliceosome [BR:
ccav03041
]
112520395
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112520395
Spliceosome [BR:
ccav03041
]
Complex B
Other components
Prp19-related factors
112520395
Complex C
112520395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_19
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
112520395
NCBI-ProteinID:
XP_024984542
LinkDB
All DBs
Position
LG 10:complement(16468040..16474545)
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AA seq
915 aa
AA seq
DB search
MSIPSDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARTESPFKKRAVIYERALKALPGSY
KLWHAYLRERLELVRNLPISHTQYQTLNNTFERALVTMHKMPRIWIMYLTSLTEQKLVTL
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGVPIETSLRVYRRYLKYDPGHIEDLIEFL
LNSELWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLLEKARDVFEEGMTTVVTVRDFSVIFDAYSQFEESVL
ALKMEGMSESEDEEEDGEKKSVVEDEEDEEDDRLNVAKLEEKLKRFWLCDEKDVDLRIAR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTIDPMKAVGK
PHTLWVAFAKLYESHKDIANARVIFDKAVQVNYKAVDNLASIWCEWAEMELRHKNFKGAL
ELMRRATAEPSAEVKRRVAADGNEPVQIKLHKSLRLWTFYVDLEESLGTLESTRAVYERI
LDLRIATPQIIINYAMLLEDNKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEMAPAEVVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPPNEKWS
MYEIYIARASEIFGVPKTREIYEQAIVSDGLPERDAMKMCIKYAELEKNLGEIDRARKIY
VYASWLADPRTDGDFWNKWHEFEVQHGNEDTFRDMLRIKRSVSARHSQTHVMLPEYLMQK
PTVDEAMDQLKKAGVPEDEMAALERQLAPAAPKDLSTKDTGARKLGFVSGGLQSSETASG
ILNQEEIELPEGSGSDEEDDDGDGKVEIAQKDVPEAVFGGLVRKRDEEAEKDKENGDGGS
RLGALERIKRMRQGN
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattccaagcgatttgtatccaagccaagatgatctcctatacgaggaagaactc
ctcagaaaccctttcagtcttaagctatggtggcgttatttgattgcacgaacggaatct
cctttcaagaaacgagcggtaatctatgaacgagccctcaaagctcttccgggaagctac
aagctatggcatgcttacctccgtgagcgtctcgaattggtacgcaatttacctatttct
cacacgcaataccaaaccctgaacaatacatttgaacgagctttagttacaatgcacaaa
atgccccgaatttggatcatgtacttgactagcttgactgaacagaagctagttactctt
actcgtaggacctttgatagggcgctctgtgctttgcctgtgacacagcatgataggatt
tgggaaccatatctcgtttttgtgagccaaaggggtgtcccaatcgagacctcactcagg
gtttatagaaggtatctgaagtatgaccccggtcatatcgaggatcttatcgagtttttg
ttgaattctgagctatggcaggaggcggctgagaggttggcgggcgtcttaaatgacgat
agattttattcgattaaggggaagacaaaacataggttatggttggagctgtgtgatttg
cttacccagcatgccacagagatctcagggttgaatgtggatgctattattagaggtggt
atcaggaagtttacagatgaggtgggtcgtctgtggacttcgttagcagattattatatc
aggaggaaactgttggagaaagccagagatgtgtttgaagagggtatgactaccgttgtc
acggtaagagattttagtgtcatttttgatgcgtactcacagttcgaagaaagtgtgctg
gctttgaagatggaagggatgagtgagagtgaggatgaagaggaagatggtgagaaaaag
agcgttgttgaggacgaggaggatgaagaagatgatcggcttaatgtggcaaagttggag
gagaaacttaagagattttggttgtgtgatgaaaaggacgttgacctgaggatagcaaga
ttagagcatcttatggataggaggccagaactggctaatagtgttcttcttcgccaaaat
cctcataatgtggaacagtggcataggagggtcaagatctttgaaggcaatccgacaaag
cagatattgacgtacaccgaggccgtaagaacaattgatccaatgaaagctgtcggcaaa
cctcatacgttatgggttgcttttgccaaattgtatgaaagtcataaagacattgctaac
gcgagggtgatatttgataaggctgtacaagtgaactacaaagctgtggataacttggct
agtatttggtgtgaatgggcggagatggagcttagacacaaaaatttcaagggagcgctg
gaactaatgaggcgtgctactgcggaaccgtctgctgaggtgaaacgcagagtggctgct
gatggcaatgaaccggtacaaataaagttgcacaagtccctaagactttggacattttac
gtggatctagaggaaagtttaggcactttggaatctactcgtgcagtatatgagaggatc
ttggatcttcggatcgccacaccacagattattataaactatgcaatgctgttagaggat
aacaagtactttgaggatgcttttaaagtctatgaaagaggggtgaagatctttaaatat
ccccatgtgaaagacatatgggttacttatctttcgaagtttgtcaaaagatacggcaag
tccaaacttgaaagggctagagagctatttgagcatgctgttgagatggcccctgctgaa
gttgtaaagccattgtatcttcagtatgctaagttggaggaggattatggtctagctaaa
cgagccatgagggtttatgatcaagcaacaaaggctgttccacccaacgagaagtggagc
atgtatgaaatttacatagcccgtgcatctgaaatatttggagttcctaaaactagggag
atctatgagcaggcaattgtgtctgatggacttcctgagagggatgcgatgaagatgtgc
atcaagtatgcagagcttgagaagaatctgggtgaaattgaccgtgcacgtaaaatatat
gtttatgcatcttggttggcagatcctcggactgatggtgacttttggaataagtggcat
gaatttgaagtacaacatggcaatgaggacactttccgagacatgcttcgcattaagagg
agtgtttctgcaagacatagccagacacatgttatgctccccgagtatctgatgcagaag
cctactgttgatgaagccatggatcaactgaagaaagccggtgttcctgaagacgaaatg
gctgctttagaaagacagttggcgcctgccgccccaaaggatctctccaccaaagacact
ggagctagaaagcttggatttgtgagcggtggtttacaatcatcagaaaccgcttccgga
atcctaaatcaagaagagatcgagcttccagaaggaagtgggagtgatgaagaagacgat
gatggtgatgggaaagttgagatcgcacagaaggatgtacccgaagctgtgtttggagga
ctcgttaggaaaagggacgaagaagcagaaaaggataaagaaaatggagatggcggcagc
cgtcttggtgccctggaacgaattaagcggatgcgccagggtaactag
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