KEGG   Cynara cardunculus var. scolymus (artichoke): 112520410
Entry
112520410         CDS       T05604                                 
Name
(RefSeq) splicing factor U2af large subunit B
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112520410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112520410
Spliceosome [BR:ccav03041]
 Complex A
  U2 snRNP components
   U2 related factors
    112520410
 Complex B
    112520410
SSDB
Motif
Pfam: RRM_1 RRM_9 RBD_DEAH11
Other DBs
NCBI-GeneID: 112520410
NCBI-ProteinID: XP_024984561
LinkDB
Position
LG 10:complement(20848895..20859370)
AA seq 878 aa
MRKSTGHKHKYTNKCEIPQSPSNDGTAARTRPFSFDEIMLRRKNKKQSGSVEDQQGDSEV
ASVKGAQSVTGLVESERRERRDVGGHEQHASKEPLKVHSRAKEDKSKMREGKIVEGEYRE
SNNAQRRSKVGSDNAKDRRKERGINEKRKNQDRSSDDSDNEYGKRHGKDSAIKARDRNVE
RNRGRSEHVSKTRTQNGYDERTRDQDAGKKHESRTWHDSDTSERKQKKGTSESRHEDLKL
KGKWSRSRERTRDKRRSNSPSPRGYKQRLHDVQEHEELSAHSSKDRLGRFDSNVDRKRIS
INGSSNKSKRHETAASRLGGYSPRKRRSEAAVKTPSPTSRSPEKNAGWDSPPVKMEGSFI
SSFQSDLLSLNKTELSNRQEVASVVPLISSIPKPTFGLLSSIPSMMNSTVDSVQLTQATR
PKRRIYVENLPSSASEAAVMEWLGGYLRPSGVNHVQGTSPCISCIVNKEKGQALVEFLTP
EDASTALSLDGRSFSGNILKIRRPKDYVDASTGVSEKPVAGAVSVKNIVEDSPNKIFIGG
LSKLITSKMLMEIASAFGPLKAYHFEANADLDGPYAFVEYVDQSVTVKACVGLNGMKLGG
KVLTVTQATPDASSLENHGDQPFYGTPEHARPLLEEPTQVLKLSNVLDPNSLLSLSEPEL
EEILEDVRLECTRFGMVKSINIIKQNDNPTSSDTVKVAEEDCSMADIVTEDQSRERGSEP
SGSDKDQEIKEPADGNDCHDDKPEEVNEINGDNHENKIVKDETSDNSVLENQNLEENSNQ
ISSAIDQMELNDLKSRDDFGTENKPLKLEMVSLESRSATKDEASDLNDTFKVGCVLVEYK
RTEASSMAAHCLHGRIFDGRTVSVGFVAHDVYCARFRK
NT seq 2637 nt   +upstreamnt  +downstreamnt
atgagaaagtctactgggcacaagcacaagtacacaaacaaatgtgaaatcccacagagt
ccttccaacgatggcactgctgcacgaactaggccttttagttttgatgagatcatgctt
agaaggaaaaacaaaaagcaatctggaagtgttgaagaccagcaaggtgattcagaggta
gcctctgttaaaggagcccagagtgttactggtcttgtggaatctgaaagacgcgaacgc
agggacgttggtggccatgaacaacatgcttctaaggagcctttaaaggtacattctcga
gcaaaagaggataagtctaagatgagagaaggcaaaatagtggaaggtgaatacagagaa
agtaataatgctcaaagaagatcaaaggttggtagtgataatgctaaagatagaaggaaa
gaaagaggtatcaacgagaagagaaagaaccaggataggtcaagtgatgactctgacaat
gaatatggaaagaggcatggtaaggattctgcaattaaagccagggacagaaatgttgag
aggaacagagggagatctgaacatgtcagtaagacgagaacgcaaaatggatatgacgag
cgaactagagaccaggatgctggaaaaaaacatgaatcacgaacgtggcatgattccgat
acttcagagaggaagcaaaaaaaaggaacatctgaatctcgccatgaagacttaaaattg
aaaggtaaatggtccaggagcagagagcgtacaagagacaaaagaaggtccaattcgcct
tcaccaaggggatataaacaaagattacatgatgtgcaagagcacgaagagttatctgca
cattcttcaaaagataggctaggaagatttgattccaatgttgacaggaagagaatatca
atcaatggttcaagtaacaagtctaagagacatgaaacagctgcaagtagacttggtggc
tattcaccaaggaagagaagaagtgaggctgctgttaagactccttccccaactagtcgt
tctccagagaagaacgctggatgggactcgccacctgttaagatggaaggaagttttatt
agttctttccagtctgatttgctgtcattaaacaaaactgaactatcaaatagacaggag
gttgccagtgtggttcccctcatttcaagtatccccaagccaacctttggactactttcc
agcattccttcaatgatgaattctactgttgattccgtccagctaactcaagcaaccagg
cctaaaaggaggatttatgtagaaaacttgccatcttcagcctctgaggcagctgtcatg
gaatggcttggtggttatcttcgaccttctggtgttaatcatgtccagggcacaagtcca
tgtattagctgtattgtgaacaaggagaagggtcaggcacttgtggaatttctcacacct
gaggatgcttctactgctctcagtttggatggcaggtctttctccgggaacattcttaag
atcagacgccccaaagattacgttgatgcaagtactggtgtgtcggagaaacctgtggct
ggagctgtttcagttaaaaacatcgttgaagactcccctaacaagattttcattggtggg
ctttcaaaacttatcacatctaaaatgctcatggagattgccagtgcttttggacctcta
aaggcctaccactttgaggctaatgcagatcttgacggtccatacgccttcgttgagtac
gttgatcaatctgttactgtcaaagcatgtgtgggtcttaatggtatgaagttgggtggg
aaagttctgactgtaactcaagcaactccagatgcttcatcactggaaaaccatggcgac
caacctttctatggaactccagagcatgcacgaccgcttcttgaagaacctacacaagtt
ctgaagctcagtaatgtgctggacccgaacagcctattgtcgctctctgaaccggaattg
gaagaaatactagaagatgtacgactagagtgtaccaggtttggcatggtcaagtcgatt
aacatcattaagcaaaacgacaatcccacaagttcagatacagttaaagttgctgaagaa
gattgttccatggccgatatagtaaccgaggaccaatccagagaaagaggatccgagcct
tcaggcagcgataaagatcaagaaatcaaagaacctgcagatggaaacgactgtcatgat
gataaacctgaagaagttaatgagatcaatggtgataaccatgaaaacaagattgtgaaa
gatgaaacatctgataatagtgttttagaaaaccagaatttggaggagaattcgaaccag
ataagctcggcaattgatcaaatggagttgaatgacctcaaatctagagatgattttggg
accgaaaacaaaccattgaaactggagatggtctcgcttgaatcacgtagtgccacgaaa
gatgaggcatctgatctgaacgatacttttaaggtcggttgtgtgttggtggagtacaaa
agaaccgaagcttcttccatggctgcacattgtttacatggccggatttttgacggaaga
acggtgagcgtgggatttgttgcacacgatgtctactgtgccaggtttcgtaaatga

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