Cynara cardunculus var. scolymus (artichoke): 112520446
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Entry
112520446 CDS
T05604
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Module
ccav_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112520446
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
112520446
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
112520446
NCBI-ProteinID:
XP_024984605
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Position
LG_10
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AA seq
392 aa
AA seq
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MASNGSQILRTAFIYFLLSLFQSSCNAASYNVVRFGARADGRTDSSKALEAAWRAACGST
ASSTVYIPRGTYMTRPVVFSGPCRSRILFQIDGKLVAPPNYQAMGNSGFWILFTKVSRLT
VHGGTIDARGSQFWVCRRTGSNCPAGVRSISFMWSNNVVVSGLKSLYSQTIHVAVSQCSN
IRFEHMSIIAPSRSPNTDGFIIQSSTGVTIRNSLIKTGDDCIALGPGSKNVLIEKIACGP
GHGISIGSLGNSLNELGVQNVTVRNTIFTKTQNGVRIKSWARDSKSYATNIEFRNIIMRA
VDNPIIIDQTYCPSNRCPRETSGVEVSNVRYSNIKGTSTTVEAVRFECSLSNPCRGIRMR
NVRLSTPNRATTTTCENVHGSASGLVIPRSCF
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaatggcagccagatcctaagaactgcattcatatacttcctgttatcactc
tttcaatcttcttgtaatgcagcttcttacaatgtggttcgttttggggccagagccgat
ggccggactgactcgagcaaagcccttgaagcggcgtggagggctgcctgtggttcgacc
gcttcgtccacggtttacattcccagaggcacctacatgaccagacccgtcgtgttcagt
ggaccatgccggagcaggattctgttccagatcgacggtaaacttgttgctccaccaaat
tatcaggccatgggaaactccggcttctggatactgttcactaaagtttcaaggttaacc
gtccatggcggaaccattgatgcaaggggttcacagttctgggtttgtcggagaactggc
agcaactgtccggctggagtaaggtcgatatcgttcatgtggtcgaataatgtggtggtg
agtggactaaagtcattgtacagccaaaccattcatgttgccgtgagccaatgcagcaat
atacggttcgaacatatgagcattatagccccgagccgaagccccaacacggatgggttc
attattcaatcctcgactggtgttacgatcagaaacagtctgattaagaccggggacgat
tgcattgcactcgggcctggctccaagaacgtattgatcgagaagatcgcttgtggccct
ggccacggtataagcataggtagcttggggaacagtttgaacgagctcggagtgcaaaac
gtgacggttcgcaacacgatattcacgaaaactcaaaatggtgttcgaataaagtcgtgg
gcaagggacagtaagagttacgcaacgaatatcgagtttaggaacataataatgagggct
gtggacaacccgatcatcatcgaccagacttactgcccaagtaaccgatgcccgcgtgag
acatcaggagtcgaagtgagcaacgtgagatacagcaacataaaaggaacatcaacaacg
gtggaagccgtgaggtttgaatgcagcttgagcaacccgtgcagagggatccggatgcgt
aacgtgagactaagcactccgaatcgagctacgactacgacctgcgaaaacgtccacggc
tcggcttccggcctggtgattcccaggagctgtttctga
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