KEGG   Cynara cardunculus var. scolymus (artichoke): 112520644
Entry
112520644         CDS       T05604                                 
Name
(RefSeq) DNA repair protein RAD5A isoform X1
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112520644
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    112520644
SSDB
Motif
Pfam: SNF2-rel_dom UBA_RAD5A Helicase_C HIRAN zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-RING_2 Prok-RING_4 DEAD zf-C3HC4_4 zf-RING_5 RING_XB3-XBAT31 zf-RING_4 UBA_Rad5 zf-ANAPC11
Other DBs
NCBI-GeneID: 112520644
NCBI-ProteinID: XP_024984826
LinkDB
Position
LG 11:3619489..3628041
AA seq 1039 aa
MGNKITDELIEMVRSIVGHDYSKMDVVRALHMANNDATAAINIIFDTPSFKRSEAPRSPK
VLSPNATAKTQDAVRNSKRNGVSTVDDEPSLSRSVELTVDKGKEVVNNLNAGSDLNGSSK
WWFVGCCGVMGLSTCKGRKIKAGDQVNFTFPPEKWSSGPSPGRFGGGGRGRQPTACSEIV
RFSTLASGEIGRIPNEWSRCLLPLVRDKKVQIEGFCKSAPDVLGLMDTINLSVSVYINSS
MLHKSHKTSLKVPSSSIDETAIQPLPSLFRLLGLVPFKKAEFTPSDLYTRKRPLDIKDSS
GVPAPLLNASKTINSSLNVSKVETEETISDNDLDNIVGVANGSELEEMEPPTALLCDLRP
YQKQALHWMVRLEKGPCIDDAATTLHPCWDAYHLADTRKFIVYVNAFSGEATTEFPSILQ
MARGGILADAMGLGKTIMTISLLLAHTERGGALGRYANSQACSESNEVGNGSNQTSSSPK
KPSKFSGFDKLRKQKQALIGGGNLIICPMTLIGQWKAEIETHAEPGSLSIYVHYGQSRPK
DAKILAQSDVVLTTYGVVASEFSSENAEEHGGLYSVRWFRVVLDEAHTIKSSKSQISMAA
ATLVADRRWCLTGTPIQNNLEDIYSLLRFLRIEPWGSWTWWNKLIQKPFEDGDARGLNLV
QNILRPIMLRRTKFSTDREGRPILILPPAEMQVIYCEQTEAEKDFYDALFKRSKVKFDQF
VEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFSDLDKLAKRFLKGGKDTMEEG
KEMPSRAYIQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLSSWRSLNSGLC
PVCRKEVSKQELITAPTESRFRVDVEKNWVESSKVSALLCELENFRLSGSKSIVFSQWTA
FLDLLQVPLSRNKISFARLDGTLNQQQREKVIKQFSEESDILVLLMSLKAGGVGINLTAA
SNAFVLDPWWNPAVEEQAVMRIHRIGQTKSVSIKRFIMKGTVEERMEAVQARKQRMIAGA
LTDQEVRTARIEELKMLFT
NT seq 3120 nt   +upstreamnt  +downstreamnt
atggggaataaaatcaccgatgaactaatcgaaatggttcgatccatcgtaggccacgat
tattccaagatggatgtagtcagagcccttcacatggcgaacaacgatgccactgccgca
attaacataatttttgacaccccaagtttcaaaagatcggaagccccaaggagcccaaaa
gttttgagtcctaatgcaactgcaaagacacaagatgcggttaggaattcaaaaaggaac
ggtgtcagtactgtagatgatgaaccaagtttaagcaggtcagtggagcttacagttgac
aagggaaaggaagtcgtgaataatctaaatgcgggttcagatttgaatggaagcagtaag
tggtggtttgtaggttgttgtggagtgatggggttgtctacttgtaaagggaggaagata
aaggccggtgatcaagtgaattttacgtttccaccggaaaaatggtcgagtgggccctcg
ccaggcaggtttggtggcggcggccgtggcaggcagcctactgcatgttcagagattgtg
aggttttctacattagcttctggggagattggtcggatcccaaatgagtggtctcgatgc
cttttgccccttgttagagataagaaggttcagattgaaggtttttgtaaatctgctcct
gatgtcttggggcttatggataccattaatctaagtgtcagtgtttacatcaacagttct
atgttacacaaaagccataagacctctctcaaagtgcctagcagttccattgacgaaaca
gccatccaacctcttccaagcttgttccggttacttggacttgttcctttcaaaaaggca
gaatttacacctagtgacttgtatacaaggaagcgacctttagacataaaggacagttct
ggtgttcctgctccattgttaaatgctagcaaaactataaactcatctttaaatgtaagt
aaagttgaaactgaagagacaatttcagataatgaccttgacaatattgttggtgttgca
aatggctctgagttagaggaaatggaacctcctacagctctattgtgtgatctccgcccc
tatcaaaagcaggcacttcattggatggttcgtctggagaagggaccatgcatcgatgat
gcagctacaactcttcatccatgttgggatgcttatcatcttgcagacacgaggaaattc
atagtctatgtgaatgcattttctggagaagcgacaacagaatttcctagcatccttcaa
atggccagaggaggaattttggcagatgctatggggcttggaaagactatcatgaccata
tcactcctccttgctcacaccgaaagaggtggagcattgggtagatacgccaacagtcag
gcatgcagtgaaagtaatgaagtgggcaatggctcaaatcaaacttcatcatctccaaag
aaaccgtctaagttttccggttttgataagcttagaaagcagaaacaggcgctcattggt
ggggggaatcttattatatgtcctatgactcttataggccaatggaaggcagagattgaa
actcatgctgagccagggtctttatctatttacgttcactatgggcaaagtcgaccaaaa
gatgccaaaatattagctcaaagtgatgtcgtgttgaccacctatggggttgtagcctca
gagttttcatctgagaatgctgaagaacatggtgggctttattctgtgagatggtttagg
gtggtgcttgatgaggcacataccataaaatcttctaaaagccagatttccatggctgca
gctacccttgttgctgatcgtcgatggtgtcttactggtactcctattcaaaacaatttg
gaagacatttacagtcttcttcgcttcttaaggattgaaccatggggaagctggacgtgg
tggaacaagctaatccagaaaccttttgaggatggtgatgcaaggggattaaatttggtc
cagaacattttaagaccgataatgctaagaagaacaaagtttagcacagacagagaaggc
agacctatattaattctcccacctgctgagatgcaagtaatatattgtgaacaaacagaa
gctgaaaaagatttttatgatgctctctttaagagatcaaaggtgaaatttgatcaattt
gtcgagcaagggagggttcttcataattatgcttctattttggagttacttttgcgtctt
cgtcaatgctgtgatcacccatttcttgtgatgagtcgaggtgacactcaagagttttca
gatttagataagctggcaaaacgttttcttaagggtggtaaggacaccatggaagaagga
aaagaaatgccttctagagcttatatacaagaggttgttgaagagttaagaaaaggggag
cagggagaatgtcctatatgccttgaagcttttgaagatgcagtattaacaccatgtgct
catcggttatgtcgtgaatgtctcttatcaagttggagaagcctcaattcgggtctctgt
cctgtttgtagaaaggaggtgagcaagcaggaacttattacagcaccaactgagagtcgg
tttcgagttgatgttgagaaaaactgggtggaatcatcaaaagtgtctgcactgttgtgt
gaattggaaaattttcgcttatcaggctctaaaagcatcgtatttagtcagtggactgcc
ttcttagaccttctacaggttcctctttctaggaataagatttcatttgctcgtctggat
gggactctaaaccagcaacagcgtgaaaaagtcataaagcagttttctgaagaaagcgac
attctggtattattaatgtcattgaaggctggaggagttggaatcaacctgacagcagca
tctaatgcattcgtcttggatccttggtggaatcctgctgttgaggaacaagccgtcatg
cgcatccacaggattggacaaacaaaaagtgtttcaatcaaacgttttattatgaaggga
acggttgaggaacgaatggaggcagtacaagcacgtaaacagcggatgattgctggtgcc
ttaacagaccaagaggtccgaactgcacgtattgaggaacttaagatgcttttcacttga

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