Cynara cardunculus var. scolymus (artichoke): 112520650
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Entry
112520650 CDS
T05604
Name
(RefSeq) zinc finger CCCH domain-containing protein 24
KO
K15332
tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccav03016
]
112520650
Transfer RNA biogenesis [BR:
ccav03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
112520650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
zf-CCCH
Methyltransf_25
RRM_1
Methyltransf_4
MTS
Ubie_methyltran
Methyltransf_15
Ish1
Methyltransf_11
Methyltransf_32
PCMT
PrmA
Torus
zf-CCCH_2
AviRa
NPR3
Motif
Other DBs
NCBI-GeneID:
112520650
NCBI-ProteinID:
XP_024984841
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Position
LG 11:2968048..2975496
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AA seq
803 aa
AA seq
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MMATETLDTPTNGSTSNVTGELNPPEDCANVSHSSPDATPVGDVEQGDKRKRIESETDEK
TVAVHPLWKTSLCSYFRRTGGECSHGETCRYAHGEEELRPRPDNTWDPTSEMAKKLKLEH
EVREKRSDERDEEVMMTETISEDGCSESTLDKCLVNLPMKWSSDNLRSFLNEQGIQYKSA
KTKKGMVVGFVSFETAEQVKTAIEKLQGKPFGNKNLKIADVIPRAFDKIVKPALISDNSD
ILESANEVEDGDSVNGSSTPGSSVLKGRSAREVVTPLAHMSYAVQLEHKKNSLAQTMKKL
TRNARKACPNGVSLPDWILKSREIGGLPCKLEGIIESPLVNGYRNKCEFSVGYSLQGKPT
VGFSLGNFREGVTAVEEPLDCPNVSRIGCKYAEIMQNFLQISLLPIWNRMNNTGFWRQLT
VREGRTPGKNAEAESGEENISEVLLMVQICSTGFDNEVINVELENMAEAFVVGASTSSPS
LPLTVLVVQDHLGISNVAPADAPLRTLPLTKAVSRSVEDSEVVAEARIQDYINNLRFCIS
PTAFFQVNTLAAEKLYSLAGDWAGLGPNTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNAS
AVADANRNAEINGIKNCRFVCSKAEDVMGSLLKEYLTKKVDNDADIGNKEETNASEEKAP
DAEDSSGLNLKDEKESNCVTESSSSKMHHFENVVAIVDPPRVGLHPTVIKALRTHSHLRR
LVYISCNPESLMANAIELCTPSADKNEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQP
VKAMAVDLFPHTPHCELVMLLER
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaactgaaaccctagatactccgaccaatggctcgacatcgaacgtcaccggg
gaactgaatccgccggaagattgcgcaaatgtctctcattcatctccagatgcaacacca
gtaggagatgtggaacaaggagataagcgtaagagaatcgaatccgaaaccgatgagaaa
accgttgcagttcatcctctatggaagacgagtctgtgttcttacttcaggcggacggga
ggtgagtgtagccatggagaaacgtgccggtatgctcatggagaggaggagctccgacct
cgaccggacaatacgtgggaccctacttctgagatggcgaagaagttgaagttagaacat
gaagtcagagagaaacgttcggacgaaagagatgaggaggttatgatgacagagacgata
tcggaggacggttgctctgagtctactctcgataagtgtttggtgaatcttccgatgaag
tggagttcagataatttaaggagttttcttaatgagcagggtattcagtataagtcagct
aagacaaagaaaggaatggttgtaggctttgtaagttttgaaacagcagagcaagtgaaa
actgctattgagaaactgcagggaaaaccgtttgggaataaaaacttaaagatagcggat
gtcattcccagagcatttgacaaaattgtgaaaccagcactgatttcagacaattcagac
atattggaatcagcgaatgaggttgaagatggggactccgttaatggcagttcaacccct
ggaagttcggtattgaagggtaggagtgcccgggaggttgtgactccacttgcccatatg
tcttatgcagttcagctggagcacaagaagaactctcttgcgcagactatgaaaaaactt
actcgaaatgcacgtaaagcttgtcccaatggtgtttcactaccagattggatacttaaa
tccagggaaataggtggtcttccttgcaaactagagggcataattgaatcaccacttgta
aatggataccgcaacaaatgtgaattttctgttggatattctttacaaggaaaacctaca
gtgggcttttcacttgggaacttcagggagggtgtgacagcagttgaagaacctttagat
tgcccaaatgtttctagaattggttgcaagtatgctgaaatcatgcagaatttcctacaa
atttcactcctccctatatggaacaggatgaataatactgggttttggcgtcaactgaca
gtccgagaaggaaggacgccaggcaagaatgctgaggctgaatccggcgaagaaaacatt
tcagaggtcttgcttatggttcagatttgctcaacgggcttcgataatgaagttattaat
gttgaacttgagaacatggctgaagcttttgtggtgggagcttccacaagttctccatct
ttgcctcttacagtgctggttgttcaggatcatctagggatatccaacgtagcaccagct
gatgctccgttgcgcaccctgccgcttaccaaggctgtaagtagatctgtggaggattct
gaagttgttgcagaagcaagaattcaagactatataaacaaccttcggttttgtatatcc
ccaacagccttttttcaggtgaatacccttgcagcagagaagctgtattcgcttgctggg
gattgggctggtctgggacctaatactttgctttttgatgtatgctgtgggactggaaca
attgggcttactttagcgcaccgtgttggaatggttgttgggattgaaatgaatgcttct
gcagtagctgatgctaataggaatgctgaaataaatggcattaagaattgcaggtttgtc
tgttcaaaggctgaggatgtgatgggatctttactaaaggagtacttaacaaaaaaagta
gataatgatgctgatattggtaataaagaagaaacaaatgcttctgaagaaaaggctccg
gatgctgaagatagctcggggttaaaccttaaagacgagaaagagagcaattgtgttact
gaaagcagtagtagcaagatgcatcattttgaaaatgtcgtcgccattgttgatcctccc
cgtgttggacttcatcccactgtaatcaaagctcttagaactcattcacatttaaggagg
cttgtttacatttcatgcaatcccgaaagcttaatggcaaacgctattgagctttgcact
ccgtccgctgataaaaacgagaaagggaacaagaacaatagaggatggagaaatatgagc
agtgctggtttggctcgccatcgagccaaatctatgcccaactcggagccgtttcaaccg
gtcaaagccatggcggtcgatcttttccctcacactccacattgtgaactagtcatgctt
cttgaaaggtaa
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