Cynara cardunculus var. scolymus (artichoke): 112520693
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Entry
112520693 CDS
T05604
Name
(RefSeq) general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112520693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112520693
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112520693
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112520693
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
112520693
NCBI-ProteinID:
XP_024984929
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Position
LG_11
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AA seq
871 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNTVSELESQIDSFEAEMEGLSVRKGKARPPRLTHLESSINRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFDDVDMLYNTLPLDKVES
LEDLVTIGPPGLAKGVGASGAVLSIKSALSTSSAQLPGDSVQEQVDETAPQDGISEFGAR
TPPPKSSAISSASPTSAGIHATPAATSVSSVLSGPSSVKGVLDNTGSSVPSSPISSAAKE
EEISSFPGRKPSPVLVEAGLRNLGRGGMTNQSSISIPVSSGSTASTNGSLGVAPSVSDTS
RRAMLGGDERLGSSGMVQPLVSSLSSRMILSQGAKISDAVGAGDSGNNGEAGGMTGRVFP
PSGVAGIQWRPGNPFQNQHEGFRGRTEIAPDQREKFLQRFQQVQQQGQGTLLGMPSLSGG
NHKQFTAQQNPLLQQFNSQSSAVSPHGGMIGSPAAGLITATSAQQQPSSIHSQSGQHTLI
STGSKDTEAGHVKADELQQHQSLSDDSATSSALDKNTANEDDLKVSYASDTQTGVSVSVT
EPAQVTRDIDLSPGQPLQSNQSASLGVIGRRSVSDLGAIGESLSGSTLSLGASHDQQHTL
QMLEAAFYKLPQPKDSERAKSYTARHPAVTPQSYPQVQAPVVSNPAFWERLGSDNIGTDT
LFFAFYYQQNTYQQYLAAKELKKQSWRYHKKYNTWFQRHEEPKVATDDYEQGTYVYFDFH
MGNDEMQHGWCQRIKSEFKFEYNFLEDELVV
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtagaaagcttcaaggtgagatcgatcgggttttgaagaaagtccaggaa
ggcgtcgatgttttcgatagtatttggaacaaggtttacgatactgacaatgccaatcag
aaggagaagtttgaggctgatttgaagaaggagatcaagaaacttcagaggtacagagac
cagattaagacatggatacagtccagcgagatcaaggataagaaggttagtgcctcttat
gagcaggctctgatggatgctcgcaagcttattgaaaaagaaatggaacgatttaagata
tgtgagaaggaaacaaagacaaaagcattctctaaggaaggtctgggacagcaacctaaa
acggatccgaaggagaaagccaagtcggagactagagattggttgaacaatacggtgtct
gagctggaatctcaaattgatagttttgaagctgagatggaggggctatctgttagaaaa
gggaaagcaaggccaccaagattgactcatttagagtcatcaatcaaccggcataaggct
catataatgaagttagagttgatattgagattgctggataatgatgagctgagtcctgag
caagtcaatgatgttaaggatttcttggatgactatgtggaacgaaatcaggaggatttc
gatgaatttgacgacgttgacatgctatacaacaccttacctttggacaaggtagagtca
ctggaagatctagttaccattggtccacctggtcttgctaagggtgttggtgctagtggc
gctgttctaagcataaaatctgccttgtctacatcttcagcacagttaccgggagattca
gtccaggagcaagttgatgagacagctccccaggacggtatttcagagtttggggcaagg
actccacctccgaaaagtagtgcaatttcatctgcttctccaacatcagcaggaatccat
gcaactcctgctgctactagtgtttcttcagtcctttcaggtccaagttctgttaaggga
gttttggacaatactggctcttctgttccttcgtcacctataagcagtgctgccaaggaa
gaagagatttccagctttcccggtcgtaaaccatctccagtgcttgtcgaagcaggatta
aggaatcttggtagaggtggtatgaccaaccaatcctcaatcagtattccagttagctcc
ggcagtactgcttctaccaatggatcccttggtgttgctccttctgtgtcagacacatct
aggagagctatgttaggaggtgatgagagacttggcagtagtggaatggtgcagcccctg
gtttcttctttaagtagtagaatgatattgtcacaaggtgccaagatcagtgatgctgtt
ggtgctggtgacagtggcaataatggtgaggctggaggtatgacgggcagggtgtttcca
ccatctggagttgccggcatacaatggaggcctggaaatccgtttcaaaatcagcatgaa
gggtttcgcggaagaactgaaatagcaccagaccaaagggagaaatttttgcagcgattc
caacaggtgcagcaacagggtcagggtaccctccttggcatgccttccctttcggggggg
aatcataagcagttcacggcgcagcagaacccccttcttcagcagttcaactctcaaagt
tcagcagtatcgcctcatggtgggatgattggatcaccagctgcaggtcttatcactgcc
acctccgcacagcaacaaccaagttcaatccattcacagtctggtcaacacacactgatt
tcaactggttcgaaagataccgaagctgggcatgtgaaagctgatgagctacagcaacat
caaagtctatctgatgattctgccacaagttctgcacttgataagaatactgccaacgag
gatgatttgaaagtgtcatatgcatcagatacacagaccggagtttctgtctcagtgacg
gaacctgcacaagttacccgagatatcgatctctctcctggtcaacctttacagtccaat
caatctgctagcctcggggttattggtcgaagaagtgtttctgaccttggtgccattgga
gagagcctcagtgggtcaactttgagcttgggagcctctcatgatcagcaacacaccctg
caaatgcttgaagctgccttttacaaacttccacaacccaaagattccgaacgtgcaaaa
agttacactgcaagacaccctgctgtgacccctcaaagctatcctcaagttcaggctcca
gttgttagtaacccagccttctgggaacgtcttggatctgataacattggaaccgatact
ctgttttttgcgttttactatcaacagaacacgtatcaacagtatttagccgcaaaagaa
ctgaagaagcaatcatggagataccataaaaagtacaacacgtggtttcaacggcatgaa
gagccgaaggttgcaacggatgattatgaacagggaacttatgtttactttgattttcat
atgggcaatgatgagatgcaacatggctggtgccaaagaatcaaatcggaattcaaattc
gagtacaattttcttgaagatgaactggttgtgtaa
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