Cynara cardunculus var. scolymus (artichoke): 112520815
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Entry
112520815 CDS
T05604
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112520815
03015 mRNA surveillance pathway
112520815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112520815
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112520815
5.6.2.5 RNA 5'-3' helicase
112520815
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112520815
mRNA cycle factors
Common to processing body (P body) and stress granule
112520815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
112520815
NCBI-ProteinID:
XP_024985180
LinkDB
All DBs
Position
LG 11:17487544..17502535
Genome browser
AA seq
1273 aa
AA seq
DB search
MDSQPNNLYETASQPDTGNDDAYTFLEFNTQGEEDFNYPEFQELSQPNAVRSSPSSSVWP
TPSDSISVDTSAAVDHRSDSNASPGSATSGKGGGGRGNNNVNQASAVDALAAGMSGLNFE
ETGDDESYEYGKGDFMEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLV
RAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKD
MNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARHISAQQINKVEELWKTNPDATLEDLE
KPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKR
IAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVP
VDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEFQMVRNALPRR
FGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP
SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQL
KDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQ
STEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVVLGVKPIRLQV
QYRMHPCLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISAS
GTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKE
IEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS
KQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVANDSFG
SAASGNPGSDGRNGRSRGSYMPPGPPNGTHKPSLHPAAYPMPRVPLPPYHGGPQPYAIPT
RGVHGPVGGVPHVPQPGSRGFSAGRGNAGAPIGSHLPHQQGSQQPIGASMGSNFNFPSLE
NPTSQSSVGGPLSQPGYVSNMTQGPGQTFRDGFSVGGMSQDFLGDDFKSQGSHVPYNVAE
FSTQASQGGYTVDYANPTTQGGFPGSYLNQNSQAGYSRFGTGNDFMSQDYMGHGSQGLFT
QVGFNDPSQDDASQSHFGVPPTSSLQTQNYMNPLYSQPFAHYNSQPLNMQAPQQQQQQQQ
QQQQQGQGSHYNG
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggattctcagccgaacaacttatacgaaacggcctcccagcccgacaccggcaacgac
gacgcctacacgttcttggaatttaacacgcaaggggaagaagacttcaattacccagag
tttcaagagctctcacaacccaatgccgttcgatcttcaccctcatcgtcagtatggccc
acaccgtccgactccatatccgtcgacacctccgccgccgtcgaccaccgttctgatagc
aacgcatcccctggctcagcaacttcggggaagggcggtggtggtaggggtaataataat
gttaatcaggcgtcggcggttgatgccctagctgcagggatgagcgggttgaattttgaa
gagactggcgatgatgagagttatgagtatggaaagggggattttatggagcacgcatgt
aggtattgcggggtgcagaatccggcgtgtgtcgtgaggtgtaacgtgccatcttgtcgg
aaatggttctgcaattcaagggggaacacgtctggttcccacattgttaatcatttggta
cgagctaagcataaagaagtatgtcttcataaagacagtcctctgggagaaacgattctt
gaatgctataactgcggatgtcgaaatgttttccttctgggatttatttcagccaagaca
gagagtgtggttgttctactttgcagggaaccttgtcttaatgtgaatgcgctgaaagac
atgaattgggatctgagtcaatggtgtccacttattgatgatagatgtttcttgcagtgg
cttgttaaggttccatctgaacaggagcagctgcgggcacgccatatcagtgctcagcag
atcaataaggtggaagagctttggaaaactaatcctgatgctacgttggaggatcttgag
aagcctggtgtagatgatgagcctcagcctgtagccttgaaatatgaagacgcctatcag
tatcaaaatgtgtttgccccactcatcaagcttgaagccgactatgataaaatgatgaaa
gaatctcaaagcaaagacaacctcacaatacggtgggatattggtcttaacaagaagcgt
attgcatattttgtttttccaaaggaagacaacgaattgcgtcttgtacctggtgatgag
ttacggctgcggtactccggggatgctgctcatccagcttggcagtcagttggacatgtg
ataaaactcactgcacaagaggaggtggcgcttgagcttcgtgcgagtcagggagttcct
gttgatgtgaaccatggttttagtgttgactttgtatggaagagcacaagttttgatagg
atgcagggtgcaatgaaaacttttgcagtggatgaaacaagtgtcagcgggtatatttat
catcatttgttaggccatgaggttgagtttcaaatggtccgtaatgcattacctcgccgt
ttcggtgcacctggtcttccggagcttaatgcatctcaagtttttgctgtaaaaagtgtc
cttcagaaaccaataagtttgattcaagggccaccaggcactgggaaaacggtcacttct
gccgcaattgtttatcacatggctaaacaaggtcaaggacaggttctggtatgtgcacct
agcaatgtggctgtagaccaactcgcggagaagataagtgccactggcttaaaggttgta
aggctctgtgctaaatcaagggaagctgttagttcacctgttgagcatttaacccttcat
tatcaggttcgccatcttgatacatctgaaaagagtgaacttcacaagctgcagcaattg
aaagatgaacaaggggaattatccagcagtgatgagaagaagtataaagccctgaagcgg
gctacagaacgggagatatctcagagcgctgatgttatctgttgcacatgtgttggtgct
ggagatccccggttggcaaattttagatttcgtcaggtgcttattgacgaatctactcaa
tcaactgagcctgagtgtcttattcctctagttcttggggcaaagcaggttgttcttgtt
ggtgaccattgccagcttggtccggttatcatgtgcaagaaagcagctcgtgcagggtta
gctcagtcactatttgagcgacttgtggtgcttggtgtcaaaccaattagattgcaggtt
caatatcggatgcatccgtgcctttcggaatttccttccaatagtttttacgaaggtacc
ctccaaaatggagtgacaatcaatgaaagacaatcaacaggcattgattttccctggcct
gtgcccaaccgtcccatgttcttttatgtccagatgggtcaagaagaaattagtgctagt
ggaacatcctatcttaataggacagaggctgcaaatgtcgaaaaaatagtgaccactttt
ttgaggagtggtgtagttccaagtcagataggggttataacaccgtatgaaggccagcgc
gcatacattgttaactatatgtcaagaaatggtgcacttaggcagcagctttacaaggaa
attgaggttgcaagtgtagattcatttcaaggtcgggaaaaagattacatcattttatca
tgtgtgagaagtaatgaacatcagggtattggatttcttaatgatccacgcaggcttaat
gttgcacttactcgtgctcgttatggtatcgtcattctgggaaatccaaaagttcttagt
aaacaaccactatggaatgggttactgacccattataaggagcatgaatgtttagttgaa
ggccctttaaacaacttaaagcagagtatggtgcaatttcagaagccaaagaaaatatac
aatgatcggaggcttttctttggtggtggacctggtattgtagccaatgacagctttgga
tctgctgcttctggaaatcctggcagcgatggaagaaacggtcgttccagaggttcatac
atgccacctggaccacctaatggtactcataaacctagtttgcatcctgccgcataccca
atgccccgggtgcctcttccaccttatcatggtggtcctcagccttatgccataccaact
cgtggagtacatggacccgttggcggtgttcctcatgttcctcagccaggtagtcggggt
ttcagcgctggtcgggggaatgctggtgctcctattggcagccatctaccgcaccagcaa
ggctcacagcaaccgattggtgcaagcatggggtctaactttaacttcccttcgctagaa
aatccaactagccagtcatcagttggtggtccattatctcaaccaggatatgtttctaat
atgactcaaggaccgggacaaacatttcgtgatgggttctcggttgggggcatgtcacag
gatttcttaggtgatgattttaaaagccaagggtcacatgttccatataatgttgctgaa
ttttcgacacaggcttcccaaggtggatacactgttgactatgctaatccaacgacccag
ggagggtttccaggaagctacttgaaccagaattctcaagctggatattctcgttttggt
acaggaaatgacttcatgtctcaggactacatgggtcatggttctcaaggcttgtttacc
caggtcggattcaatgatccgtcacaagatgatgcttcacagagccactttggtgtcccc
cctacaagttctctgcagacacagaattacatgaatcctctatactcccagccatttgca
cactataactctcaacctctgaacatgcaagctcctcaacagcaacagcagcaacaacag
cagcagcagcagcagggacaggggtcccactacaacggatga
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integrated database retrieval system
