Cynara cardunculus var. scolymus (artichoke): 112520825
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Entry
112520825 CDS
T05604
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04120
Ubiquitin mediated proteolysis
ccav04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112520825
04120 Ubiquitin mediated proteolysis
112520825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112520825
Enzymes [BR:
ccav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112520825
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112520825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
FlxA
zf-ANAPC11
zf-RING_5
zf-RING_16
HOOK
Prok-RING_4
Prefoldin_2
Nuf2_DHR10-like
zf-HC5HC2H
zf_RING_Vps8
NTR2
zf-Di19
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
112520825
NCBI-ProteinID:
XP_024985192
LinkDB
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Position
LG 11:13472989..13485136
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AA seq
561 aa
AA seq
DB search
MMRLQTYAGLSVVATLAVIYHAFSSRGQFYPATVYLSTSKVCLVLLLNMGLVIMCIMWQL
TKRIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVMFLAMVTALLLIKSLHWLA
QKRVEYIETTPTVPMLSHIRIVSFMGFLLLVDCLFLYNSVKYLIQTRVASVSLFFSFEYM
ILATTTISTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLVIFVNYG
VPLHLIRELYETFRNFKLRIADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKRLVCGHLFHVHCLRSWLERQHTCPICRALVIPNESGTSASRSRAGVHRQGANSANTS
SQDQNGDGAGSGNISRHQKRVQAAAAAASIYQKSFVYPSPSTLTWSSGYAVLPNKSTHGT
DVNNAASSGEHGNSIPNNPANFPSFQFPQPYFIPVDAPSVSPNHEDGWSTNLQMSVSQLE
AQKKIIQHQIEVLQNQLESLQKPASNKTSVAESSSGGGGGSGSWEAGLNTTAPDSKGKAV
LSSDGEQHQKEVADDTNVAAL
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcagacatatgctggactcagtgtggttgccacactggctgtcatttat
catgccttcagtagtagagggcagttctacccggcaacagtttatttatctacctccaaa
gtctgtttagtgcttcttctcaacatgggtttggtgatcatgtgcattatgtggcagctg
acaaaacgaatttttcttggttctcttcgagaagcagaggttgagagactgaatgagcaa
tcatggcgagaagtcatggaaatactttttgccatcactatattccggcaggacttctct
gttatgtttcttgctatggttactgctcttttacttatcaagtcgttgcattggttggct
caaaagagagttgaatacattgaaacaactccaactgtgccaatgttgtctcacatccgg
attgtttctttcatgggatttcttctccttgttgactgtcttttcttgtataactcggtg
aagtacttgatacaaacccgggtagcatcggtttcccttttcttttcattcgagtacatg
atattggcaacaacgactatatcaacgtttgtcaaatatgttttctatgtcagtgacatg
cttatggaaggacagtgggaaaaaaaagctgtgtacacgttctatttggagcttatccgt
gacttgctgcacttatctatgtatctatgctttttcctcgtaatctttgtgaactatggt
gtgcctctgcacttgatccgggagctatatgagacattccgaaactttaagctgcgaatt
gctgattacgtccgttatcggaagatcacatcaaatatgaatgaccgctttccagatgca
acacctgaagagttgaatgcaagtgatgcaacctgcattatctgtagagaggagatgact
accgcaaaaagactagtctgtgggcatctttttcatgtgcactgcctccggtcatggtta
gagcgacagcacacatgtcctatttgcagagcgctcgttataccaaatgagagtgggaca
agtgcatcacgatcacgagcaggagttcatcgtcaaggagcaaattcagcaaacacatcg
tctcaagatcaaaatggtgatggtgcaggaagtgggaatatcagtcggcatcagaagaga
gtccaagctgcagcagcagctgcttctatatatcagaaatcttttgtttacccttctcca
agtactttaacatggtcatctggatatgctgtacttcccaacaaatccacacatggcacc
gacgtcaataatgcagcttcttctggcgaacatgggaattcaatcccgaacaatcctgca
aactttccatcttttcagttcccacagccctattttataccagttgatgctccgagtgtg
agtcctaaccatgaagatggatggagcaccaacctgcagatgtccgtctctcaactggaa
gcccagaaaaaaataattcagcaccagattgaggtgctgcaaaatcagcttgaaagctta
cagaagcctgcatccaacaaaacctcagttgcagaaagcagcagtggcggtggtggtggc
agtggcagctgggaggcgggtctgaatacgaccgcccctgatagcaaagggaaggcagtt
ttatcgtcggatggtgagcaacatcaaaaggaggtggccgacgacacaaacgtggcggcg
ttgtag
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