Cynara cardunculus var. scolymus (artichoke): 112520874
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Entry
112520874 CDS
T05604
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Module
ccav_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112520874
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
112520874
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix_3
EGF_Mua-3
NosD
Motif
Other DBs
NCBI-GeneID:
112520874
NCBI-ProteinID:
XP_024985260
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Position
LG_11
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AA seq
395 aa
AA seq
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MVMIKHSITLLFVVFAFHYSSSTKVTYNVLKFGAKGNGLLDSRNAFLKAWGLACASTNPA
IIYVPIGRYLIASAITFTGQGCKSKSITINIDGTLVAPSTNYYAIGNAQVWIKFYRVNHV
TISGGTLDAQGAPLWACKSSGKITCPKGATTLGFYHSQNIVIRKLRSLNSQMFHILLYAC
NNAKLQGVSVSAPGLSPNTDGIHLTYSTGITILNSKISTGDDCVSIGPGNSNIWIEKVVC
GPGHGISIGSLGWELEEAGVQNVTVKTTRFIGTQNGVRIKAWARRSNGFVKDVVFQHATM
INVQNPILIDANYCPNNNNCPNQVSGIKISNVVYEDVHGTSATRVAVKFDCSKGKPCNGI
KLKDVNLIYGGQPAASSCSYVAGIASGLLRPTSCL
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggtcatgatcaaacatagtatcacattactatttgttgtctttgccttccactactca
tcatcaacaaaggttacatacaacgtcctgaaatttggagccaaaggcaacggtctctta
gattcaagaaatgcattcctcaaagcatggggtttggcatgtgcctccaccaatcccgct
atcatctatgttccaattgggaggtacttgattgcatctgctatcacattcaccggccaa
ggatgtaaaagcaaatccatcacaattaacatagatggaaccttggtggctccctctacc
aactattatgctatcggcaatgcccaagtttggattaagttctaccgggttaaccatgtt
accatctccggtggaacccttgatgcgcaaggtgcccctctatgggcttgcaaatcctct
ggaaagattacttgtcctaaaggagctacgacacttggcttctaccattctcaaaacata
gtgatccgaaagttaaggtcattaaatagtcaaatgttccatattctactctatgcatgc
aacaacgccaagctacaaggagtgagtgtctcggcacccgggctcagccctaatacagac
ggtatccatttaacatattccacaggtatcaccatcttgaattctaagatctcaacaggg
gacgattgtgtctcaataggcccaggcaattctaatatctggatagagaaggtggtgtgc
ggccctggtcatggcataagcattgggagtctagggtgggaattggaagaagctggtgtc
caaaatgtaacggtaaaaacaacaagatttataggtactcaaaatggtgtgaggataaag
gcatgggcgaggcgcagcaatgggtttgtgaaggatgttgtttttcagcatgcaacgatg
atcaacgtccaaaatccaattttaatagatgcaaattactgccccaacaataacaattgc
cctaatcaggtttcaggaataaagatcagcaacgtagtgtatgaagatgtacatggaaca
tcagctacacgagtggcggtgaaatttgattgtagcaaagggaagccatgcaatggaatc
aaactaaaggatgttaatctcatatatggggggcaaccagctgcctcttcatgctcctat
gttgccggtattgcttccggcttacttcgacctacaagttgtctctaa
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