Cynara cardunculus var. scolymus (artichoke): 112520996
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Entry
112520996 CDS
T05604
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112520996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112520996
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
112520996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
112520996
NCBI-ProteinID:
XP_024985386
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All DBs
Position
LG 11:5349250..5363171
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AA seq
722 aa
AA seq
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MTHDRDLPHHAAHYAVAMKLLISLRQNSLNSSMAMLSGCSRDVSYSQNFHSYFNYEESKN
PIQEIFEKPQLILESIGFAGGEKAMGSERAKVSFHLASIPRPQDVYRIMVNNVNKPFEHV
WLPISEDGSRFIHPLERFSVXNFVDQNTRDIKPVMPPPVESTPFKLVEEVKDLKELAAKL
QDASEFAIDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRVHIGPYLREIFKDPTKKK
VMHGADKDILWLQRDFGIYVCNMFDTGQASRVLNLERNSLEFLLLHFCGVSANKEYQTAD
WRLRPLTDEMLRYAREDTHYLLHIYDVMRIALGFSYRDLEHPDALIDVYRRSYDICMQLY
QKDVLTEYSYLNIYGLHAADFNGQQLAIVAGLCEWRDIVARAEDESTGYVLPNKSLIEIA
KHMPLTTGDLRRLLRFKHPHVERNLGAVVSVIQHSMRNAAAFENMANKIKQERLQMDAMR
MAQKAFEEASFWPNVAPGAYSCSRGVANQFENEVENLLARINRNHQPEGPSVRGGGRSNW
DVLNRSGLMSTQPLNYGPGPSGWVQTDRRSCGFGIGTLPGNAAGNRKFDRGKKPMEETNF
KQIHPFSSSTKKPKPLHSAMNEPANAQETPNRDAPTATSSKLEHITLLQNSGPVTAEEKR
DREENVSDLSSSFQKLLQMKAEKPEEGGGKGLSEVERFDHAAAGKEANLGESNEEKKCGG
DV
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgacgcatgatcgtgacttgccacaccatgccgcacattacgccgttgctatgaagttg
cttatttcattaagacaaaattctcttaactcttcaatggcaatgctttctgggtgttca
agagacgtttcatacagccaaaatttccattcctacttcaattatgaagaatccaaaaac
ccgattcaagaaatctttgaaaagccccaattgattcttgaatcaattgggtttgcaggg
ggtgaaaaagcaatggggagtgaaagggcaaaggtgtcttttcacctagcttcaattcca
aggccacaggatgtgtataggattatggtgaacaatgtgaataagccctttgagcatgtc
tggttgccaataagtgaggatggatccaggttcatacacccactggagaggttttcagtt
tagaacttcgttgatcaaaacacaagggatatcaagcctgtaatgccgccaccggttgaa
tctacaccgttcaagcttgtggaagaagtaaaagatttgaaggagctcgctgcaaagttg
caggatgccagtgaatttgcaatcgatttggagcacaaccagtatcgatcattccaaggt
ttgacgtgtctgatgcaaatatctacgagaaccgaagacttcattgtcgatacgctcaaa
cttcgggttcatatcggtccatatctgcgcgagatttttaaggatcctaccaagaaaaag
gttatgcacggagcggataaggatatcttgtggctgcaacgagacttcggcatatatgtt
tgcaatatgtttgatactggacaggcctcgcgggtgttgaatttggagagaaattctctc
gagtttctgttgctgcatttctgcggggtttctgcgaataaagaataccaaaccgcagac
tggcgattgcgcccgctgactgatgaaatgctgcgatatgcaagagaagacacacattat
cttttgcatatatatgatgttatgagaatagcgttgggtttctcgtatcgggatctagag
catcctgatgcacttatcgacgtatatcggcgtagctacgatatatgtatgcagctgtat
cagaaagacgttctcactgagtattcgtatctcaatatttacgggttgcatgccgctgat
ttcaacggtcaacaacttgccatcgttgcggggctttgcgaatggcgagacattgtcgca
cgcgcagaagatgaaagtaccggatatgtattgccgaacaaaagcttaatcgaaattgca
aagcatatgccattgacaactggggatctgcgtcgcctgttgagattcaagcatcctcac
gtcgaacgcaacctcggtgctgttgtaagcgttattcagcattctatgcggaatgcagct
gcgtttgaaaacatggccaacaaaattaagcaagaacgcttgcaaatggacgctatgcga
atggcacaaaaagcattcgaagaagcttcattttggccaaatgtcgcaccgggagcatat
agctgcagccgaggtgttgcaaatcaattcgaaaacgaagttgaaaaccttcttgctaga
atcaaccgaaaccatcaaccggagggtccttctgtgcgtggtggtggccgcagcaattgg
gatgtgctgaacagatctgggctaatgagcacacaaccgttgaattatggtccgggacca
agtggttgggttcaaacggatcgaagaagttgtgggttcgggattgggacgttgcctgga
aatgcagcaggaaacaggaaatttgaccgcggtaaaaagccgatggaggagacaaacttc
aagcagatccatccgttttcttcttctacgaaaaaacccaagccgttgcattcggccatg
aacgaacctgctaatgctcaagaaactccaaaccgtgacgcacccactgcaacatcatct
aagctggagcacataacgcttttgcaaaattccggtcccgttacggctgaagagaaacgt
gatagggaagagaacgtatcggatctatcatcgagcttccagaagttgctacagatgaaa
gcggaaaaaccggaggaaggtggtggcaaggggttgtcggaggtggagcgattcgatcat
gcagcggctgggaaagaagcgaatttgggagaaagcaatgaggagaagaagtgtggcgga
gatgtctag
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