Cynara cardunculus var. scolymus (artichoke): 112521093
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Entry
112521093 CDS
T05604
Name
(RefSeq) protein CHROMATIN REMODELING 5-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112521093
03036 Chromosome and associated proteins [BR:
ccav03036
]
112521093
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112521093
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
112521093
SLIK complex
112521093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
CHDCT2
RPAP1_N
TRAPP14_N
Motif
Other DBs
NCBI-GeneID:
112521093
NCBI-ProteinID:
XP_024985526
LinkDB
All DBs
Position
LG_11
Genome browser
AA seq
1722 aa
AA seq
DB search
MAFFRNYTNGTVAEGVLNDKHQGGTIERAESIVGNHDLETTSSMDKGFATKMEDGQYHGD
GEPYSTSRSLNEPAAEEEDGLLNLTASTTTTTAITTTTNTRKPAGRWGSTFWKDCQPMHH
KHGSESVQESRSSSEYNIEEGSGNDLSETDKANKGQNVDEMLSDDYYELDGDDQSDSMHH
KLLSNAAGYSSISQPQVADNHFVSRKKSKTSSGGAYVEDADFEDDEEEEDEDDPADVDFN
PDLVTTSVGRGKKEHDENWEGEGFDEDDNSEDDELEISDDDSYKKPSGMQRQKRGRNSLK
SSREPKPSTSFSRRKRGRASFDEDDSSTNDSDDDIEEDFKSTRRRSSHPRKDPGGRSIST
KGSGRINEIRTSTRSVRKVSYAESEESEEHDEDIKKKSHKDEMEEEDGDSIEKVLWHQPK
GTAEEAVRTNKSTDPLLLNQLFDSEPDWNDTEFFIKWKGQSHLHCQWKSFSELQNLSGFK
KVINYTKKVMEDIKHRRTVSREEIEVIDVSKEMDLDLIKQNCQVERIIADRISKGSEVPE
YLVKWQGLSYAEATWEKINDISFAQAAIEEYKAREAALAAVHGKMVDFQRRKSKASLRKL
DEQPDWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMVGFLQNSQQI
HGPFLVVVPLSTLSNWAKEFRKWLPDMNVIIYVGTRASREVCQQYEFFSDKNTGGTTKFD
ALLTTYEVLLKDKMVLSKIKWNYLMVDEAHRLKNSEASLYTTLKEFSTKNKLLITGTPLQ
NSVEELWALLHFLDSDKFNSKDEFVQNYRNLSSFNEIELANLHMELRPHILRRVIKDVEK
SLPPKIERVLRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFL
FESADHGYGGDSAITGSSKLERIILSSGKLVILDKLLDRLHETNHRVLIFSQMVKMLDIL
AEYLSIKGFKYQRLDGSTKAEVRHQAMEHFNAPSSDDFCFLLSTRAGGLGINLATADTVI
IFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKL
NAEGRLEKKEAKKGSAFDKNELSAILRFGAEELFKEDRNDEENKKRLLSMDIDEILERAE
KVEQKGAEDEGGHELLSAFKVANFCSAEDDGSFWSRWIKPDAVSQAEEALAPRAARNSKS
YAEAIPSERNNKRKKKGVEFQDRAIKRRKADYSSYQPPALEGASAQARRWSYGNLPKRDA
TRFFRAAKKFGNDSQIGLIAAEVGGTVEAAPVEAQVELFDALLDGCREAVNGASLDAKGP
LLDFFGVPVKADDLLSRVEELQLLAKRISHYNNPISQFQALMYLKPATWSKGCGWNQKDD
ARLLLGIHYHGFGNWEKIRLDEKLGLLKKIAPVELQHHETFLPRAPQLKERASQLLEMEL
VAVGGKSFGTKGGRKGSKKQKDRVPNFPTSRSKSKQWKPGSPETKVPKGKFKMTRGKKNE
PLVKEEGEMSDTEEVYEQFKEVKWMEWCEDVLIEEKKTLERLHRLQTTSADLPKEKVLSR
IRNYLQLLGRRIDQIVIDHEEDPYKQERMTTRLWNYVSTFSNLSGGKLQQIYSKLKQEKG
VGPSQMNGRGGFRNETYNQSSALLNKGLDTAKFEAWKRRRRAEADSNAHFQPPLQRPQSN
GTRIPDPSLGILGAAPSDNRPFSEERPQRIRQAGFGPRQGFT
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atggccttttttagaaactatactaatggaacagttgcagagggggttttgaatgacaag
caccagggtggaaccatagaaagagccgagagcattgtaggaaaccatgatttggaaaca
acttctagtatggataaagggtttgcgacgaagatggaagatgggcagtatcatggcgat
ggtgaaccatattctacgagtaggtcactgaatgagccagcagctgaggaggaggatggc
ttattgaatttaacagcttctactactactactactgctattactactactactaataca
aggaaaccagcagggagatggggctcaacattttggaaggactgtcaacctatgcatcat
aaacatgggtcagaatctgtgcaggaatcaaggagtagctctgaatataacattgaagag
ggatctggcaatgatttgtcggaaacggataaggcaaataagggtcaaaatgtggatgag
atgttgtctgatgattactacgagctggatggagatgaccaaagtgattcaatgcaccat
aagctattaagtaatgcagctggctatagttcaatatctcagccgcaggttgctgacaat
cactttgtgtccagaaagaagtcaaaaacttcatctgggggtgcatatgtggaagatgcc
gattttgaagatgatgaggaggaagaagatgaagatgaccctgctgatgtagattttaat
cctgacttggtcaccacaagtgttggaagagggaagaaggagcatgacgaaaactgggaa
ggagaaggttttgacgaagatgataattctgaagatgatgaattggaaatctcagatgat
gattcttataagaaaccaagtggcatgcaaaggcagaagcgtgggcgtaatagtttaaag
tctagtagagaacctaaaccttctacatctttcagtcggaggaaaagaggtagggcatca
tttgatgaagacgactcgtcaacaaatgattcagatgatgatattgaagaggacttcaaa
agtacaagaaggagaagtagccaccctcggaaagaccctggtggtcgatctatttctaca
aaaggttctgggaggatcaatgaaattcgaacttcaactagatcggtgcggaaagtatca
tatgctgaaagcgaagaaagcgaagagcatgatgaagatatcaagaaaaagagccacaag
gatgagatggaagaggaagatggtgactcaattgagaaggtgctgtggcatcagccaaag
ggcacagcagaagaagctgttcgaaccaacaaatctacagaccctctattattgaaccag
ttatttgactcagagccagattggaatgatactgaattttttatcaaatggaaaggccag
tcacatttgcattgtcagtggaaatcattttctgaactacaaaatctgagtggctttaag
aaggttataaattacactaaaaaggttatggaggatataaagcacaggagaacagtatct
cgtgaggagattgaagtcattgatgtgagcaaggagatggatttggatcttatcaagcag
aattgtcaggtcgagagaataattgctgacagaatcagcaaaggttcggaagtgccagag
tatttggttaagtggcaaggtctttcctatgctgaagcaacatgggagaagatcaatgat
atttctttcgctcaagcagcaattgaggaatataaggctcgagaagctgcacttgctgct
gtacatggaaaaatggtagatttccagcgaagaaagagtaaagcaagtttgagaaagctt
gatgaacagcctgattggttaaaaggagggaaactgagagactatcaactcgagggcttg
aattttctcgttaatagttggagaaatgatacaaatgtcatattagctgatgaaatgggt
cttggcaaaacagttcagtcagtttctatggttggtttcctccagaactcacaacaaatt
catgggccttttcttgttgttgttcctttatcaaccttgtcaaattgggctaaagaattc
cgaaagtggcttcctgatatgaatgtgatcatatatgttggtactcgtgccagccgagag
gtttgtcagcaatacgaatttttctctgataagaacactggtggcactacgaagtttgat
gcgctattaactacctatgaagttctattaaaggataagatggtgctatcaaaaattaag
tggaactatcttatggttgatgaagcacataggttgaaaaacagtgaggcgtcattatat
acaacactaaaggaattcagcacgaaaaacaagcttcttattactggcactcccttgcaa
aacagtgttgaagagctatgggccttgcttcactttctcgactcagataagttcaatagc
aaggatgaatttgttcagaactacagaaatcttagttcgtttaatgaaatcgagcttgct
aatcttcatatggagttgcggccccacattctgcgaagagttataaaggatgtggagaag
tccttgcccccaaagattgagcgtgttctccgggttgagatgtcccctctacagaagcag
tattacaagtggattctggaacgcaactttcatgacttaaacaaaggtgtacgtggaaat
caggtttcccttttgaacattgtggttgagttgaaaaaatgttgtaatcatccatttcta
tttgaaagtgctgatcatggttatggtggggactctgctattactggtagcagtaaactg
gagcggatcattcttagcagtggaaagctggttatcctggacaagcttcttgacaggctg
cacgagacaaatcaccgggttctaatattttcgcagatggttaagatgttggatatctta
gcagaatacttgtcaattaaggggttcaagtatcagagacttgatggaagtacaaaggct
gaggtgcgccaccaggctatggagcattttaatgcacccagcagtgatgatttttgcttc
cttctttctactcgtgctggtggtttaggtatcaaccttgcaacggcagatacagtcata
atatttgactctgactggaatcctcagaatgatcttcaggcaatgagcagagctcacaga
attggacagcaggaggttgttaatatctataggtttgtgacaagcaagagtgttgaggaa
gacatcttggagcgtgcaaaaaagaagatggtacttgaccatttggttattcagaaacta
aatgctgaggggaggttggagaagaaagaagcaaaaaaagggagtgcgtttgacaagaat
gagttatcagctattttgagatttggggcagaggaactgtttaaagaagatagaaatgat
gaagaaaacaaaaagcgccttctaagcatggatattgatgaaattcttgaaagagcagag
aaggttgaacagaaaggggccgaagacgaaggaggacatgaattactgagcgcatttaag
gttgcaaatttctgctctgctgaagatgacggaagtttttggagtcgctggataaaacct
gatgccgtttcacaggccgaggaagctttagcccctcgagctgcaaggaacagcaagagt
tatgctgaggccatcccatccgaaaggaataacaaaaggaaaaagaagggtgtcgaattt
caggacagagccataaagcgccggaaggcagattattctagttatcaaccaccagcactt
gagggagcttctgcacaagcaagaaggtggtcatatgggaacttgccaaagagggatgct
acacgtttttttcgtgcggctaagaagtttggaaatgatagccaaattggcttaatagca
gccgaggttggtgggaccgttgaagctgctccagtagaggcgcaggttgaactttttgat
gcattattagatggttgcagagaagctgttaatggagcaagtctcgacgcaaaggggcct
ttgttggattttttcggtgttcctgtaaaggctgacgacctcttgagccgtgttgaagaa
cttcaactccttgcaaagcgcattagccactacaacaacccaatctcacagtttcaggct
ttgatgtacctcaaacctgcaacttggtctaaaggttgtgggtggaaccagaaggatgat
gcaaggttgctactggggatccattatcatggatttgggaattgggaaaagataaggttg
gatgaaaagcttggccttttgaagaagattgctcctgttgaacttcagcatcatgaaact
tttttaccacgagctccccagttgaaggaaagagcttctcaacttcttgaaatggaactt
gtggctgttgggggtaagagttttgggactaaagggggtcgaaagggttcaaaaaagcaa
aaggatcgtgttcccaacttcccaacttctcgcagcaaaagcaaacaatggaaaccaggc
tctcctgaaacaaaagtcccaaagggaaaattcaagatgacacgtggcaagaagaatgag
cctttggttaaagaagaaggtgagatgtcagacaccgaagaagtgtatgaacagttcaaa
gaagtgaagtggatggaatggtgtgaagatgtcttgattgaagagaaaaagacactggag
cgccttcacaggttacagactaccagtgcggatcttcctaaagaaaaggttctttcaaga
attagaaattatctgcagcttcttgggcgaaggattgatcaaattgttatcgaccatgag
gaggatccatataaacaagaaaggatgacaacacgattgtggaactacgtctcaaccttt
tcaaatttgtcagggggaaaacttcagcagatctattccaaactcaaacaggaaaaagga
gtgggtccttcccaaatgaacggaaggggtggttttagaaatgaaacatataatcaatca
tcagcgttacttaacaagggccttgatacagcaaagtttgaagcatggaaaaggaggaga
cgagctgaagcagactcgaatgcccattttcagccaccactgcaaagacctcagagtaac
ggtacacgtatacccgatccaagtttgggaattcttggggcagcaccatccgataataga
ccctttagtgaagaaaggccacaacggatacgtcaggctggttttggtccaagacaaggt
ttcacatga
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