Cynara cardunculus var. scolymus (artichoke): 112521149
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Entry
112521149 CDS
T05604
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112521149
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112521149
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112521149
NCBI-ProteinID:
XP_024985620
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All DBs
Position
LG 11:7151633..7156018
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AA seq
483 aa
AA seq
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MEQKWRCIVVLCSLLAVKMVAGASMEVFNFKNLTVLPGQHPSPELVAQHLQRRVNASITR
REMLSYANMDSSTSCLTGNPIDDCWRCDPNWHLNRQRLADCGIGFGQYALGGKGGRYYVV
TDSSDHDAVTPTPGTLRWAVIQTEPLWIVFPTNMHIQLSQELIFNSFKTLDGRGANVHIT
GGGCITLQYITNVIIHNIHIHHCYQSGNTNVRSSPTHYGYRTESDGDGISIFGSRDLWID
HCSLSHCKDGLIDAVMGSTGITISNNFFSHHDEVMLLGHSDAYLPDSGMQVTIAFNHFGE
KLVQRMPRCRRGYIHVVNNVYSRWEMYAIGGSGNPTINSQGNRYTAPANRNAKEVTKRVE
TAQEHWRGWNWRSEGDILVNGAFFVPSGQGLELKYEKAYSVEPKSAALIDQLTMNSGVLG
SRSNKLGKWTGEGEGEDGVGDAENDYGEDSDGSPQLNTLTLVSSCLVALLSFMFLSSLCD
TIL
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaaatggaggtgcattgtggtattatgcagtctgttagcagtgaagatggta
gcaggtgcatccatggaggtcttcaacttcaagaacctcacagtcctaccaggccaacac
ccttctcctgaacttgttgctcaacatcttcaaaggagggtaaatgcgtcaattacaaga
agagagatgctatcatacgccaacatggactcatcaacctcctgcctcaccggaaacccc
atcgacgactgttggcggtgcgaccccaactggcacctcaaccgccaacgtctggccgat
tgcggtatcggcttcggccaatatgccttaggcggcaaaggcggtcgctattacgtcgtc
accgactcctccgaccacgacgccgtcactcccactccgggcactctccggtgggctgtc
atccaaactgaacccctctggatcgtttttccgaccaacatgcacatccaactctcccaa
gaactcattttcaacagctttaaaaccctcgacggccgtggagccaacgtccacatcacc
ggcggcggctgcattacactccagtacatcacaaatgtcatcatccacaacatccacatc
caccattgctaccagtcgggcaacaccaacgtccgctctagtccgacgcattacggctac
cggacagaatccgacggcgacgggatatccatattcggatctcgtgacctttggattgat
cactgctcgttgtcgcattgcaaagatggtctcatagacgccgtcatggggtccacagga
atcaccatatcgaataacttcttctcacatcacgacgaggtgatgctgctgggccacagc
gacgcttacttgccggattccggcatgcaggtgaccatcgccttcaaccatttcggagaa
aagctggtgcagcggatgccacgatgccggagaggatatatacacgtcgtcaacaacgtg
tactcccggtgggagatgtatgctatcggagggagtggaaatccgacgatcaacagtcaa
ggaaaccggtatactgctccggccaatcgtaatgcgaaggaggtgacgaagagggtggaa
acagcacaagagcattggaggggatggaattggaggagtgaaggggatattctggtgaac
ggagctttctttgtgccgtccggccaaggattagagctcaaatatgagaaagcgtacagt
gtggagcctaagtcggcggccttgattgaccaactcaccatgaactccggcgttctcggt
agcaggagtaacaagcttgggaagtggacgggtgaaggtgaaggtgaagatggcgtaggt
gatgctgagaacgactatggtgaagacagtgatgggtctcctcagctaaacactttgact
ctagtttcatcttgtttggttgcattattatcattcatgttcttatcttctttatgcgat
actatcctgtaa
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