KEGG   Cynara cardunculus var. scolymus (artichoke): 112521345
Entry
112521345         CDS       T05604                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03030  DNA replication
ccav03410  Base excision repair
ccav03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112521345
   03410 Base excision repair
    112521345
   03420 Nucleotide excision repair
    112521345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccav03032]
    112521345
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112521345
Enzymes [BR:ccav01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     112521345
DNA replication proteins [BR:ccav03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    112521345
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      112521345
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 112521345
NCBI-ProteinID: XP_024985918
LinkDB
Position
LG 11:3857744..3879596
AA seq 2202 aa
MNADNRRRGDRRDTRISKKQKLILSAEEKLETKLGFDLFTEGEKRLGWLLTFASSSWEDQ
DTQKVYSCVDLYFVCQDGSTFKAKYKFRPYFYATTKDKMEMDVDAYLRRRYEGQIADIQI
VEKEDLDLKNHLSGLRKTYLKISFDTVQQLMQVKSDLMHVVERNQEKFNAAEAYESILAG
KSKERIQDFIECIADLREYDVPYHVRFAIDNDIRSGLWYDVNVSSDGVTLERRHDLLQRA
EVHVCAFDIETTKLPLKFPDAEYDLVMMISYMVDGRGYLIINRECVGEDIEDLEYTPKPE
FEGYFKVTNVKNEEELLKLWFSHMREVKPGIYVTYNGDFFDWPFLETRAAHHGLGMNDEL
GFQCDKIQGECRAKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVR
FAMERPQMMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLM
VQAYTANVICPNKHQSETEKFHKGHLLESETYIGGHVECLETGVFRSDLPTSFKLDPSAY
KQLIENLDRDLQYAIRVEGKMDVESVSNYDEVKDAIMEKLIGLRDEPTREETPLIYHLDV
AAMYPNIILTNRLQPPSIVSDEVCTACDFNRPGKSCLRKLDWVWRGETYTAKRSDYYHIK
RQIESEMVDGPSSKSFLDLPKVDQQLKLKDRLKKYCQKAYKRVLDKPVTEIREAEICMRE
NPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNPIKIQEAQDMVVLYDSLQLAHKC
ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGRPLELDTDGIWCALPG
SFPENFTFKTRDSKKKLTISYPCVMLNVDVARNNTNDQYQTLKDPINRTYTTHSECSIEF
EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFD
KFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLAEYGQQKS
CAVTTARRLADFLGDTMVKDKGLRCQYVVACEPRGNPVSERAVPVAIFETDAEIMKFYVK
KWCKISSDIGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVRE
KDDKMRQRKLVDIFSSVNKGNEEELRNDANGKNHVHEQNVEDMEDFRSNCKSLSVGPTPI
VRSYETNHKEKADHVKIGNPLLASVQPIDIPMENIDRHVDYQGWLDSRKRKWKQVREKRK
RQRLDNLDINHRNGVAGIPSSVASKRQAQGRTGVNSYFERHELALTRNHWQIIQLVPSLQ
HGQFFAWVVVEGIMRKIPINVPRVFYLNSKAPVTEEFPGRRVNKILPHGHQCYNLIEVII
DEDQFRAESRKLAAHLADPEVEGIYETKVALDFNSILQVGCVCKVDKSAKKRNANEGWSL
SELHMKTTTECSYLDSSIPFFYLYHSLSEVRGIYLGYFPSSSSIHAVMVNPFQNKELSPY
ILEKQFREACQVLSIESSMPRDASNFKVDYVGSPKDAEKIFQRTISEFRNQLHGPAIAVI
ECPDVHLMTSGIRALDDFPCVNIPSNARDSQYQALGWQIVAAKIGMQRCAASSRWLNERI
SLSRYSHVPLGNFEVDWLVHTADIFFARALRDQQQILWVSDNGIPDLGGDNEEETCYSDE
VNQPVLTYPGAYRKVTVELKIHHLAVNALLKSNQVNEMEGGTLFGFDHDLNSGSHLPNEQ
LGLDEATSCSPAFRVLKQLIQRCLADAVTSGNIFADAMLQHLYRWLCSPRSKLHDPALHR
MLHKVMQKVFALLLAEFRKLGATIIFANFSKVILDTGKSDLSAAQAYCDSLLKTVQTRDL
FEWIELEPLQFWHSLLFMDQYNYGGIQAKSDQTDESTHDDPQVDIVSSWNIAENLPKETQ
DHFILIVSEFMYLPWKFAQDEASKRATIRDDDLCTPSITAAAAEIFESCMTDHLREQIRS
HFTDKLLRIVCDTVLHMRGTGKSQAAQDNSSGNSTIENAYKGDPALEFIKHVCAVLVLDQ
NVQHDILIMRKNLLKYVRVREFAPEAEFQNCSFSFTLPNVICSYCNDCRDLDLCRDRALL
TQEWRCGVPQCGQPYNREVMENGLLQIVRQRERLYHLQDLVCVKCKQVKAAHVAEHCACA
GNFTLKEEVSVFRNKMEVFLNIAINQKFELLKECVSWILELR
NT seq 6609 nt   +upstreamnt  +downstreamnt
atgaacgccgataatcgaagaagaggagaccgcagagatacaaggatttccaagaagcag
aagctcattctctcagccgaagaaaagctcgagaccaagctcggttttgatctcttcacc
gaaggtgaaaaacgcctcggctggctactcacatttgcttcttcatcgtgggaggaccaa
gatacacagaaagtctacagctgtgtcgatctttattttgtttgccaggatggttcgacg
tttaaagctaagtacaagttccggccttatttttatgccactacaaaggataagatggaa
atggatgttgatgcatatttaagaagacgatacgaagggcaaattgctgatattcaaata
gtggagaaagaggaccttgatcttaaaaaccatctttctggattacggaaaacttactta
aagatatcatttgacacggtacaacaactgatgcaagtaaagagtgacctgatgcatgtg
gttgaaagaaatcaagaaaagttcaatgctgcagaggcatatgagtccatattggcaggc
aaaagcaaagagcgaattcaagattttatagagtgcattgctgatctacgggagtatgat
gtgccttaccatgtccgttttgccattgataatgatataagatctgggctgtggtatgat
gttaacgtgtcaagtgatggagttacattagaaaggaggcatgatcttttgcaacgtgcc
gaagttcatgtttgtgcatttgatatagagaccacaaagcttcctttaaaatttccagat
gccgagtatgatttagttatgatgatctcatacatggttgatggacgcggatacctgatt
atcaatagagagtgtgttggtgaagatatagaggatttggaatatactccaaaacctgaa
tttgaaggatactttaaagtgacaaatgtgaagaatgaggaagaacttcttaaattgtgg
ttttctcatatgagagaggtgaagcctggtatttatgtcacatacaatggagactttttt
gattggccattcttggaaaccagggcagctcatcatggcttgggaatgaatgatgagcta
ggatttcagtgtgacaaaattcaaggtgaatgtcgtgctaagtttgcatgccatctggat
tgttttgcatgggtcaaacgtgatagttatctacctcaagggagccatggtttgaaggct
gtcactaaagctaaattgggctatgatccattagaggtaaatcccgaggatatggttcgt
ttcgcaatggaaagaccccagatgatggcctcctattcagtatctgatgccgtgtcaaca
tactacttgtacatgacttacgttcatcccttcattttctcccttgcaactataataccg
atgcctcctgatgaagtattgcggaaaggaagtgggaccctctgtgaaatgcttctcatg
gttcaggcgtacacagcaaatgttatatgtcctaataagcaccaatctgaaacagaaaag
tttcataaaggtcaccttcttgagagtgagacatacatcggtggccatgtggagtgtcta
gaaactggtgttttcagatctgaccttccaactagtttcaaacttgatccatctgcatac
aagcaacttatcgaaaatctggatcgtgatctacaatatgctattagagtagagggtaag
atggatgttgaatcagtttcaaactatgatgaagtgaaggatgctattatggaaaagctt
ataggtttacgagatgaacctacacgagaagaaaccccccttatttatcatttggatgtt
gctgcaatgtatccgaacattatattgactaacagacttcagccaccatcaatagtttca
gatgaggtttgcactgcatgtgatttcaaccgtccagggaaatcgtgtcttaggaaactt
gactgggtttggcgtggggagacatacacagcaaagagaagtgattactatcatataaag
aggcaaattgaatctgaaatggttgatggcccctcatcaaaatcgttccttgatctgcct
aaagtggaccaacaattgaagctgaaagaccgtctaaagaaatactgccaaaaggcatat
aagcgagttcttgacaagccagttactgaaattcgagaagcagagatatgcatgcgtgaa
aacccattttatgttgatactgtccgtagtttccgtgatagaagatatgaatacaaagga
ctcaataaagtatggaaggggaagttgtcagaagcaaaggctagtggaaatcctattaag
atccaggaagcacaagatatggtggttctttatgattcactacagctggctcataaatgt
attctgaattccttttatggatatgtcatgcgcaaaggtgcaagatggtattctatggaa
atggctggagttgttacatatactggagcaaaaataattcagaatgcccgtttacttgtt
gaaaagattggaagaccccttgaattagatacagatggtatatggtgtgctttgccggga
tcattccctgagaactttacctttaaaacaagagactcaaagaagaagctgacaatctca
tatccatgcgttatgctcaatgttgatgtggcaagaaacaacacaaatgaccaataccag
actctcaaagatcctatcaacagaacatatacgacacacagtgaatgctcaattgaattt
gaagtggatgggccatataaggcaatgattcttcctgcttctaaagaagaaggaatatta
ataaagaagcggtatgctgtttttaacgacgatggaacgcttgctgaactgaaaggtttt
gagataaagaggaggggtgaactaaagctcattaaagttttccaagctgagctctttgac
aaattccttcatgggtctaccttagaggaatgctactctgtagttgcttctgttgcaaac
cgttggcttgatcttcttgacaaccaaggtaaggatattgcagacagtgaattgcttgat
tacatatcagagtcgagcactatgagcaagtctttagcagagtatggtcagcaaaaatcc
tgtgcagtaaccacagcaagacgccttgctgattttcttggtgatacgatggttaaagac
aaaggactgcgttgccagtatgttgttgcgtgtgaaccaaggggaaacccggtgagcgaa
cgtgctgttcctgttgcaatatttgaaaccgatgcagaaattatgaagttctatgtgaaa
aagtggtgcaaaatctcctcagatattggcattcgatccattattgattggtcatattac
aaacaacggcttagctctgctattcaaaagatcattacaattcctgctgcaatgcagaag
gtctcaaatcctgttccaagggtagttcatcctgattggttgcataaaaaggttcgtgag
aaggatgacaaaatgcgtcaaaggaaattagttgatattttcagttcggtgaacaagggt
aatgaagaggaacttagaaatgatgcaaatggcaaaaatcatgtacatgaacagaacgtt
gaagatatggaggacttcaggagcaattgtaaatctctcagtgttggacctacacctatt
gttcgttcttatgaaactaatcataaggaaaaagctgatcatgttaaaattgggaatccg
ctattggcatcggtacaaccaatcgatatccctatggagaatattgacagacatgtggat
taccaaggatggctagattcaagaaagagaaagtggaagcaggttcgtgaaaaaaggaag
cgacaaaggttggacaatttggacataaatcacaggaatggagttgccggtatccctagt
agtgtggcaagtaagagacaagctcagggaagaactggggtcaattcatactttgaaagg
catgaactagcccttacacgcaaccactggcagataattcaacttgttccaagtttgcaa
catggccaatttttcgcttgggttgttgtggaaggaatcatgcggaagatacctatcaat
gttcccagagtattttatcttaattctaaagctcccgtaacagaagaatttcctggaaga
cgcgtcaacaagattcttcctcatgggcaccaatgctataacctgattgaggtcataatt
gatgaagatcaatttagggcagaaagcaggaaacttgctgctcatcttgcagatcctgag
gtggaggggatatatgaaacgaaagtagctctggattttaattccatcctccaggttgga
tgtgtttgtaaggtggataaatcagctaagaaacgaaatgcaaacgagggttggagcctg
agtgaattgcatatgaaaaccactacagaatgctcttacctagactcatcaattcctttc
ttctacttgtatcatagcttatctgaagttaggggcatctatcttgggtattttccttca
tcttcaagcatccatgcagtaatggtcaaccccttccagaataaagagttatcaccatat
attttagagaaacagtttcgtgaagcttgccaagttttatcaattgaatcttccatgcca
agagatgcttctaattttaaggtggactatgttggaagccccaaagatgctgaaaagatc
ttccaaagaacaataagtgaattcagaaatcagcttcatggacctgcaattgctgtaatt
gaatgcccagatgttcatttaatgacgtctggtatacgagccctagatgatttcccatgc
gtgaacattccttcaaatgcccgtgatagtcagtatcaggctcttggctggcagattgta
gctgcaaaaatcgggatgcaacgttgtgctgcatcatctcggtggttgaatgaaagaatc
tctctttctagatattctcatgttccattaggaaatttcgaagtagattggcttgtacac
actgcagatatcttctttgcaagagcgttacgtgatcagcaacagatactttgggtatca
gataatggaattccagaccttggaggggataatgaagaagagacttgttactccgacgag
gtcaatcaacctgttcttacttatcctggtgcttacaggaaagtcacagttgaactaaag
atacatcaccttgctgtcaatgctctgttaaagagcaaccaagtaaatgaaatggaggga
ggtaccctatttggctttgatcatgatctgaactctggatcacatcttcccaacgaacag
ttgggcttggacgaggccacgtcttgttcaccagcatttcgtgtccttaagcaattgatt
caaagatgccttgctgatgcagtcacatcgggaaatatattcgctgatgcaatgttacaa
catttgtacagatggctctgcagtccgcggtcaaaacttcatgatccagctcttcatcga
atgcttcacaaggtcatgcaaaaggtgtttgcactactgctagctgaatttcgaaaattg
ggtgccacaatcatattcgccaatttttcaaaggttatattggacactggaaaatcagat
ttatctgcagcccaagcttactgtgatagtttactgaaaactgtacaaacaagagacttg
tttgagtggattgagcttgaaccgctgcaattctggcactcactgctatttatggatcag
tacaactatggtggaattcaggctaaatcagatcaaacagatgagagcacacatgatgat
ccccaagtggatattgtttccagctggaatattgcagaaaacctgcccaaggagactcag
gatcattttattttgatagtctctgagttcatgtacctcccttggaaatttgcacaagat
gaagccagcaaaagagcaactataagggatgatgacttgtgcactccatcgatcacagct
gctgctgctgaaatatttgagtcatgcatgactgatcatcttagggaacagattagatct
cacttcacagacaagctattgagaatagtttgtgatactgttcttcacatgagagggacg
gggaagtctcaggcagctcaggataattcatctgggaattcaactatcgagaacgcatat
aaaggagatcctgcactagaatttattaagcatgtctgtgctgtcctagttcttgaccag
aatgtgcagcatgatattctgatcatgaggaagaatctgttaaaatatgtgcgtgtacgg
gagtttgctccagaggccgagtttcaaaactgttcattttctttcactttaccaaatgtg
atttgcagctactgcaacgactgtagggatctggacttgtgtcgtgacagagccttgcta
actcaggagtggagatgtggtgttccacaatgtgggcagccctacaaccgagaggtgatg
gagaatggtctcctccaaatagtgcgacaaagagaacggctttatcatcttcaggacttg
gtgtgcgtaaagtgcaagcaggttaaagctgcacacgtggcggagcattgtgcatgtgct
ggcaattttaccctcaaggaagaagtgtctgtatttaggaacaaaatggaagtgttcttg
aacatagccataaatcaaaagtttgaacttctcaaagaatgtgtctcctggattcttgaa
ctaagataa

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