Cynara cardunculus var. scolymus (artichoke): 112521402
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Entry
112521402 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112521402
03041 Spliceosome [BR:
ccav03041
]
112521402
03036 Chromosome and associated proteins [BR:
ccav03036
]
112521402
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112521402
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112521402
mRNA cycle factors
Common to processing body (P body) and stress granule
112521402
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112521402
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112521402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GRIM-19
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112521402
NCBI-ProteinID:
XP_024986012
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All DBs
Position
LG 1:22688349..22693730
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AA seq
619 aa
AA seq
DB search
MRTSWADAVDNAASGSDGYGVGGTSGDSHRPAYVPPHLRNRPPTPDPMVGQATSNNGPPP
INDRLGYSGQTSGSRWAGPRSEYGRPGYGSGGGRGGRGGWGNRGGSWGGRELEANPFGND
DVDDPAEIASEQENSGINFDAYEDIPVETSGVNVPPPVNTFAEIDLGEALNLNIRRCKYF
RPTPVQRYTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPSVQRPPCFRTVFPLA
LILSPTRELSCQIHVEARKFAYQTGVKVVVVYGGAPINQQLRELERGVDILVATPGRLVD
LLERAKVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQTDMPPPGGRQTMLFSATFPREI
QRLASDFLSNYIFLTVGRVGSSTDLIVQRVEFVQETDKRSHLMDLLHAQMDNGSGKQPLT
LVFVETKKGADSLEYWLCGNGFPATTIHGDRTQPERELALRSFKSGKTPILVATDVAARG
LDIPHVSHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNMSLAKPLADLMQEAN
QEVPQWLTRYASRAAYGGGGGKNRRSGGRFGGRDFRKESSFNRGGNGGGMDYYGGGGGGG
YSGYGGGGYGGAGAPSAWD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttcgtgggctgatgctgtggataatgcagcttcaggctctgacggttatggg
gttggtgggacttcaggggattcccatagacctgcatatgttccacctcatcttcgtaac
aggccacccactcccgacccaatggttggccaggcgacatcaaataatgggccgccaccc
attaatgataggttaggatacagtggtcagacaagtgggtcaaggtgggctggtcccagg
tctgagtatggtagaccaggatatggtagcggcggcggtcgtggtggtcgaggtggttgg
ggaaatagaggtggtagttggggtggtagagaattggaggccaatccatttggtaatgat
gatgttgatgatcctgcagaaattgcatcagagcaagaaaatagtggtattaattttgat
gcttatgaagatattcctgtggagaccagtggggttaacgtaccacctccagttaataca
tttgcagaaatagacttaggggaagctctaaatcttaacattaggaggtgcaaatatttc
cgcccaacccctgttcaacggtacacgattcccatttctctggcaggacgagatctgatg
gcttgtgctcagactggctcagggaagacagctgccttttgctttcccataatcagtggg
attatgaggggcccatctgtacaaagaccaccttgttttaggacagtctttccccttgct
ctcattctatctcctacaagggagctctcttgtcagatacatgtggaagctcgaaagttt
gcttaccagactggtgtcaaggtggtagttgtttatggaggagcaccgattaatcaacag
ttacgagagcttgagagaggagttgatattcttgtggcgactcctggaagattagttgat
ttgctggagagagcaaaagtttcattgcaaatgataaggtatttagctcttgatgaggca
gatcggatgttggatatgggatttgagcctcaaataaggaagatagtggaacaaacggac
atgccgccacccggtggaagacaaacaatgttgtttagtgctacatttcctagagaaatc
cagagactggcatctgattttctttcaaattacatatttctgactgtcggtcgtgttggt
tcaagtactgatttgattgtccaaagggtggaatttgttcaagaaactgataagagaagc
catcttatggaccttctccatgcacaaatggataatggatctggcaagcaacctcttaca
ctcgtgtttgttgagacaaagaagggagccgattcacttgaatattggctatgtggtaac
gggtttccagctactactattcatggtgacagaacacagccggaaagggagctagctttg
cgatcgtttaagagtggaaagacgccaattctggttgcaacagatgtggcagctcgtggt
cttgatatcccacatgtttctcacgtggtcaacttcgacctcccaaatgacattgacgac
tacgtccaccggataggacggacaggacgagctggcaagacgggattagccacagccttc
tttaacgagaacaatatgtcgctagcaaaaccgctagcagatttgatgcaagaagctaat
caagaagtaccacagtggctcactcgttatgccagccgggcggcttatggtggtggtggt
ggcaagaacagacgctcaggaggacgttttggtggccgtgacttccgaaaggaaagctcc
ttcaacaggggtggcaatggaggcggcatggattactacggtggtggtggtggtggtgga
tatagcgggtatggtggtggagggtatggtggggctggagcacccagtgcctgggattag
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