Cynara cardunculus var. scolymus (artichoke): 112521579
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Entry
112521579 CDS
T05604
Name
(RefSeq) protein argonaute 4A-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112521579
03036 Chromosome and associated proteins [BR:
ccav03036
]
112521579
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112521579
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112521579
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
112521579
microRNA pathway
RISC loading complex
112521579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
112521579
NCBI-ProteinID:
XP_024986290
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Position
LG_1
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AA seq
866 aa
AA seq
DB search
MARKGIGTKGQKISLVSNHFNVKFSSSSDHFYQYSVALFYEDGNPVEAKGIGRRVLDVAY
KTYNSEMGGKGFAYDGEKTLFTVGALPATKLEFTVVLESLLMLRGAGGSPNGSPNESGSK
RSRRPPQCKSYKLHINYATKIPIQAIFKALEGKDSEQFHEAIRVLDVLLRQHAAKQGCLL
VRQSFFHNDAKNFVNIGGGVFCCRGFHSSFRATQSGLSLNMDVSSTMIVQPGKVTDFLLQ
NQNVRSLRDIDWLKAKRSLKSLRVKTFPSNLEHKVIGLSERSCREQRFSLRSRNQRDGHN
SPGEAIEITVYEYFVMHKRIELEYSADFPCLDVGKPKRPVYIPLEFCELVSLQRYTKSLS
NLQRASLVEKSRQKPQERMRALTGALRQSNYEADPLINSTGISISTAFTQVEGRVLEPPK
LKFGNGGDLFPRGGRWNFNNKTLVEPTKIFEWAIVNFSARCDMNYLRRELPKCSHAKGID
LDQPYAVIDENPQFRRNPAPVRVDKMFELIKQKLPGPPRFLLCILPERKNSDIYGPWKRK
CLVDFGIVTQCMAPTRINDQYLTNIILKINAKMGGINSLLSMEFSRCMPVVSRTPTIIIG
MDVSHGSPGRSDVPSIAAVVGSRNWPLVSRYRASVRTQSSRVEMIDGLFKPVSDDKDEGM
IRELLEDFYRSTPKLKPQNIIIFRDGVSESQFSQVLNIELEQIMEACKFLDGDWNPKFLV
IVAQKTHHTKFFQPNNEANVPPGTIIDNKVCHPKNNDFYLCAQNGPIGTSRPTHYHVLLD
QIGFSTDDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMAQFVKFDDLSDVASSHS
GGGSSAGGFTQIPKLHDKVSSSMFFC
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggctagaaaggggattggcaccaaaggccaaaagatttctttagtgagcaaccatttc
aacgttaaatttagcagctccagtgaccatttctatcaatacagtgtggctttgttttat
gaagatgggaatccggtggaggcaaaaggtattggtagaagagttttagatgtggcttat
aaaacatataactctgagatgggtggtaaagggtttgcgtatgatggagaaaagactttg
tttacggttggcgctttacctgcgactaagcttgagttcaccgttgtgctggagagtctc
ttaatgttacgtggagcgggtgggagcccaaatgggagcccaaatgagagtgggtcgaaa
agatcgaggcgtccacctcagtgcaagtcatataaactgcatataaactatgctactaag
atccccattcaagcgatatttaaagcccttgaaggaaaagattcagagcaattccatgaa
gctataagggttttggatgttcttctgaggcaacatgctgcgaaacaaggctgtcttctt
gttcgtcagtctttcttccacaacgatgccaaaaactttgtaaacatcggtggcggggtt
ttttgttgcaggggttttcattctagttttcgggccactcaatctggtttgagtttgaac
atggatgtttcgtctacaatgattgtccagccagggaaagtcacagactttcttcttcag
aatcagaatgtgagaagcttaagggacattgactggcttaaggctaaaagatcgctcaag
agccttcgtgtcaagacctttccttcgaatctagagcataaggttattgggttgagtgaa
agatcctgcagggaacagagattttcacttagatcgaggaatcagagagatggacacaac
agcccgggggaggccattgaaataaccgtgtacgagtactttgtgatgcataagcggata
gagcttgagtattctgctgattttccatgtcttgatgttgggaagccaaagaggcctgtt
tatattccactggagttctgcgaattggtatcattacaacgttatacaaaatcgttgtca
aatttacaaagagcttcgcttgtggagaaatctagacaaaagccacaagaacggatgaga
gccttgactggtgcgctcaggcaaagcaactacgaagccgatcctctgattaattctacg
ggcatctcaattagcactgcatttacccaagtggaaggccgtgttttggagccaccaaag
ttgaagtttgggaatggaggggacttgtttcctcgtggtggtcgatggaacttcaataat
aagacacttgttgaaccgactaagatctttgaatgggctattgtcaacttttctgcacgt
tgtgacatgaattacctacgaagagaacttcccaagtgttcacatgcgaaaggaatcgat
cttgatcaaccgtatgctgtgatcgatgaaaatcctcagtttcgacgcaatcctgctcct
gttcgtgtggataagatgtttgagttgataaaacaaaaactccctggccctcctcgtttt
cttctatgcatcctcccggaaagaaagaattcggacatctatggtccgtggaagcgaaag
tgtcttgtggactttggaattgtgacacagtgcatggctccaactagaatcaatgatcaa
tatctaactaacattattctgaagatcaatgcaaagatgggtggtataaactcactgctt
tctatggagttttcgagatgtatgcccgttgtgtcaaggacaccgaccataatcattgga
atggatgtttctcatggttctcctggccgctccgatgttccatccattgcggctgttgtg
ggatcgaggaactggccgcttgtttctcgctacagggcatctgttcggactcagtcttcc
agagttgagatgattgatggcttgtttaagcctgtttcagatgataaagatgaaggaatg
ataagggaattgttggaagatttttaccgaagcactccaaagctgaaaccacagaatata
atcatttttcgagatggagttagtgaatcgcagttcagccaagtgctgaatattgagctc
gagcagataatggaggcatgcaagtttttggatggcgattggaatccaaagtttttggtg
attgtggctcagaagactcatcacaccaagttcttccaaccaaataatgaagccaatgtt
ccaccaggaacaatcatcgacaacaaagtgtgtcatccgaagaacaatgacttctacttg
tgtgcccagaatgggccgattggtaccagccggcctacccattatcatgtacttctggac
cagattggtttttctaccgatgatttgcaagaacttgttcattcactctcctacgtgtat
caaaggagcacgactgccatctctgtcgttgctccggtgtgttatgctcacttggccgct
gcgcaaatggctcaatttgtcaagttcgatgacttgtcagatgttgcatcgagccatagc
gggggtggaagttctgcaggtgggttcactcagataccaaagcttcatgacaaagtcagc
agttcaatgtttttctgctga
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