Cynara cardunculus var. scolymus (artichoke): 112521678
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Entry
112521678 CDS
T05604
Name
(RefSeq) RGG repeats nuclear RNA binding protein A-like
KO
K13199
plasminogen activator inhibitor 1 RNA-binding protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112521678
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112521678
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Gene cluster
GFIT
Motif
Pfam:
HABP4_PAI-RBP1
Stm1_N
Orthopox_A5L
SMYLE_N
Motif
Other DBs
NCBI-GeneID:
112521678
NCBI-ProteinID:
XP_024986437
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All DBs
Position
LG 11:16544912..16550240
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AA seq
369 aa
AA seq
DB search
MASTNPFDLLGDDDNDDPSQLIAKLPAIVAAAAPSTKKSQAGGVTAKPTAKLPSKPLPPA
QAVQEARSDGQRGGGRFGGRGAGRGGRGGRGFNRDSADNENSYGTNNGFSGGYRPSDDGD
LEKSSERRGGYSGPRGGFRGGRRGGYSNGDSEGERPRRAFERRSGTGRGNEFKREGAGRG
NWGTATDEVALEQEEPVIEGEKNVDSEKPAGQEDVVDATKENPATEAEEKEPEEKEMTLE
EYEKVLEEKRKALLALKSEERKVGLDKDLAKMQLLSNKKSEEDIFVKLGSEKDKRKEAAE
KEERAKKSLSINEFLKPAEGERYQNPGGRGRGRGRGFRGGYGGGNRMNDVAVVAPAIEDV
GQFPSLGVK
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacgaacccttttgatctattgggtgacgatgataacgatgacccaagtcag
ctcatagcgaagctgcccgcgattgttgctgcagcggccccgtccaccaagaaatcgcag
gctggtggtgtgactgctaagccgacagccaagcttccatcaaagccgcttcctcctgct
caggctgtgcaagaggctaggagtgatggtcagaggggaggaggtcgtttcggtggacgt
ggtgctggtcgtggtggccgtggtggacgtgggtttaatcgtgattcagctgacaatgag
aactcatatggaactaacaatggcttctctggaggttacagaccttcagatgatggagat
cttgagaagtcctctgaaaggcgtggtggatacagtgggccccgtgggggattccgtgga
ggtcgtagaggtggctacagtaatggggattcagaaggtgaacgtcccaggagggcgttt
gaacgccgcagtggaactggtcgaggtaatgagtttaagcgtgaaggtgctggtcgtggc
aattggggaactgctactgatgaggttgccttggagcaggaagaaccggtgattgaaggt
gaaaagaatgtggactctgagaagccagctggacaggaagatgtggttgatgccaccaag
gagaatcctgcaactgaggcagaggagaaagagcctgaagagaaggaaatgacgctggag
gagtatgaaaaggtgctagaggagaagagaaaagcattgctagcactgaaatctgaggaa
agaaaggttggattggacaaggatcttgcgaaaatgcagttgctgtcgaacaagaagagt
gaagaggatatctttgttaaactgggttccgagaaggataagcgcaaagaggctgctgag
aaggaagagagagctaaaaagtcgttgagcattaacgagtttctgaagcctgcggaaggg
gaaaggtaccagaatccaggtgggcgtggtaggggccgtggacgtgggttcagaggagga
tatggtggtggaaacagaatgaacgatgtggcggttgtggctccagcgattgaggatgtt
ggtcagttcccatctttgggtgtgaagtga
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