KEGG   Cynara cardunculus var. scolymus (artichoke): 112521680
Entry
112521680         CDS       T05604                                 
Name
(RefSeq) splicing factor U2af small subunit B-like
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112521680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112521680
Spliceosome [BR:ccav03041]
 Complex A
  U2 snRNP components
   U2 related factors
    112521680
 Complex B
    112521680
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_4
Other DBs
NCBI-GeneID: 112521680
NCBI-ProteinID: XP_024986440
LinkDB
Position
LG 11:3653434..3656496
AA seq 319 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
GVDAQGNPIDPRKIQDHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEE
YAAKALKNLSGRYYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIGREL
RRQLFGRYRRRHSRSPSRSRSPYRHRSYDERGHGSRSHSRRYDDRDRDYHHESRSRRHRS
TSPLHRRERSRSSEGRRHHSPVREGSEERRAKIEQWNRQREQAKLSETNDDGVENNYESD
NYTGKGDGYYNQQSEQYEH
NT seq 960 nt   +upstreamnt  +downstreamnt
atggcggagcatttggcatcgatctttggaacggaaaaggacagagtcaattgtccattc
tacttcaagattggagcatgtaggcatggcgatcgctgttctaggcttcacaccaaacca
agcattagccccactttgctgttgtctaacatgtaccagcgccctgatatgatcactcct
ggtgttgatgctcaaggaaatcccatcgatcctcggaaaatccaggatcactttgaggat
ttctatgaagatctttttgaggagctcaacaagtatggggagattgaaagcctgaatgtc
tgtgacaatcttgctgatcacatggtgggaaatgtgtatgttcagttcagggaggaagag
tatgcagcaaaagcactgaagaaccttagtggaagatattatgccggtcgacccatcatt
gttgacttctcaccagtgactgatttccgggaagctacttgcaggcagtatgaggagaac
acgtgcaatcggggtggttactgcaacttcatgcacctgaaaaggattggcagggagttg
agacgacagctgtttggtaggtacaggagaaggcatagtcgaagtcccagtaggagcaga
agtccatatagacatcgtagctatgatgagcgggggcatggaagccgtagtcatagtcga
aggtatgatgacagggacagggattaccaccacgagagtcggtctaggaggcacaggagc
acaagccctcttcatcgaagagaacgtagcaggagttcagaaggcagaagacaccatagt
ccagttagggaaggtagtgaagaaagacgggccaaaattgagcaatggaacaggcaaagg
gagcaagcaaaactcagcgagacgaatgatgatggtgtcgagaataactatgagagtgat
aattatacagggaagggtgatggatactacaatcagcagtcagagcaatatgagcactga

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