Cynara cardunculus var. scolymus (artichoke): 112521682
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Entry
112521682 CDS
T05604
Name
(RefSeq) protein CHROMATIN REMODELING 5-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112521682
03036 Chromosome and associated proteins [BR:
ccav03036
]
112521682
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112521682
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
112521682
SLIK complex
112521682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
SWI2_SNF2
Chromo_MIT1
CHDCT2
DUF5787
Motif
Other DBs
NCBI-GeneID:
112521682
NCBI-ProteinID:
XP_024986446
LinkDB
All DBs
Position
LG 1:complement(38534503..38559930)
Genome browser
AA seq
1700 aa
AA seq
DB search
MAFFRNYTNGTVSEDVLNDKSQHGSIDRADNNVGNDDLDATSSLDKEFETKMEDQQYGSD
GEPYAVSRLQDDPAAGDDGGLSNLQASTTKKAAGRWGSTFWKDCQPMHQKRGSESMQESK
SSSGYKNEEGSENDLSEVDKAHKGQNVDEMLSDDYYEQEEDDQGDPLHRKLLNNTDGYSS
KSRSGLIAASTNNFMPEKKSKASYGGEYEDDDAYFEDEEDDVDEDDPDDVDFDPDLGTTT
VGRGNKEHDEDWEGGDLDEVDNSDDDELDISDGDDDDFYKKPRGMQRRKGGRSSVKSSSE
PKLSTFSNRRKRGRTSFEEEYSSANDSEDDDEEGFKSTGRRSGHIRKKAGGRSIPTKGPG
SNNEVRTSTRSVRKVSYAESEESEEHDEDIKRKRQKEETEEEDGDSIEKVLWYQPKGMAE
EAVRNNKSTEPLLLSHLFHSEPDWNETEFFIKWKGQSHLHCQWKSFSELQTLSGFKKVLN
YTKKVMEDIKYRRTVSREEIEVIDVSKEMDLDLIKQNCQVERIIADRISKDGSGIPEYLV
KWQGLSYAEATWEKFVDIAFAQAAIDEYKAREVALTAVQVKLVDFQRRKSKASLRKLEEQ
PEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGP
FLVVVPLSTLSNWAKEFRKWLPEMNVIIYVGTRASREVCQQYEFFSDKKTGKGTKFDALL
TTYEVLLKDKTVLSKIKWNYLMVDEAHRLKNSEASLYTTLKEFSTKNKLLITGTPLQNSV
EELWALLHFLDSDKFKSKDEFVQNYKNLGSFNEIELANLHMELRPHILRRVIKDVEKSLP
PKIERVLRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFES
ADHGYGGDSSTTGSSKLERIILSSGKLVILDKLLDRLHETKHRVLIFSQMVRMLDILAEY
LSFKGFKYQRLDGSTKAEVRHQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFD
SDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAE
GRLEKKEAKKASTFDKNELSAILRFGAEELFKEEKNDEENKKRLLSMDIDEILERAEKVE
QKGPEEEQGHELLSAFKVANFCSAEDDGSFWSRWIKPDAVSQAEEALAPRAARSSKSYAE
AIPSERVNMRKKKGVESQDRAIKRRNADYSGYLPPPLEGASAQVRGWSYGSLPKRDATRF
FRAVKKFGNDSQISLIAAEVGGSVEAAPVEAQIELFDSLIEGCREAVNVGSLDPKGPLLD
FFGVPVKADDLLSRVEELQLLSKRISRYNDPISQFQALMYLKPATWSKGCGWNQKDDARL
LLGIHYHGFGNWEKIRLDEKLGLLKKIAPVELQHHETFLPRAPQLKERASQLLEMELVAV
GGKISGAKGGRKGSKKQKDHLLPNIPVAQNKGGRQWKGGSPDLLKVPRSRLKSTRAQKKN
EPLVKEEGEMSDTEEVYEQFKEVKWMEWCEDVLIEERKTLERLHRLQTTSADLPKEKVLS
RIRNYLQLLGRRIDQIVIDHEEDPCKQERMTTRLWNYVSTFSNLSGGKLHQIYSKLKQEG
SSSHINTRGESRILNKGGLDTAKFEAWKRRRRSEGEFHRPSNNGNGTVIPDPSSGILGPP
PSDSNRQRHHPGFGPRPGVK
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atggccttttttagaaactacacaaatggaacagtctcagaggatgttttaaatgacaag
agccaacatggaagcattgatagagctgacaacaatgtaggcaatgatgacttggatgca
acttcaagtttggataaagagtttgaaacaaagatggaggatcaacagtatgggagtgat
ggtgaaccatatgctgtgagtaggttgcaagacgatccggcagcaggggatgatggtggt
ttatcaaatttacaagcttctactacgaaaaaggcagctgggagatggggctcaactttt
tggaaggactgtcaacccatgcatcaaaaacgtgggtctgagtccatgcaggaatcaaag
agcagttctgggtataaaaatgaagaagggtctgaaaatgacttgtcagaagtggacaaa
gcacataaaggtcaaaatgtggatgagatgctgtctgatgattactacgagcaggaggaa
gatgatcaaggtgatccattgcaccgcaagctgttaaataataccgatggctatagttca
aaatcacgttcagggcttattgcagcttctactaacaacttcatgcctgagaagaagtca
aaagcttcatatggtggtgaatatgaagacgatgatgcctatttcgaggatgaggaagat
gatgtagatgaagatgaccctgatgatgtagattttgatccagacttgggcactacaact
gttggaagagggaacaaggaacacgatgaagactgggaaggtggagacttagatgaagtt
gataactctgatgatgatgaattagacatatcggatggtgatgatgatgatttttataag
aaaccaaggggcatgcaaaggcggaagggtgggcgtagtagtgtaaagtctagtagtgaa
cctaaactatctacattttccaatcggaggaaaagaggtagaacatcattcgaggaggaa
tactcatcagcaaatgattcagaggatgatgacgaagagggcttcaaaagtacaggaagg
agaagcggacatatccgaaaaaaagctggtggtcgatctattcctacaaaaggtcctgga
agcaacaatgaagttcgaacttcaactcgatctgtgcgcaaagtatcgtatgctgaaagt
gaagaaagtgaagaacatgatgaagatattaagagaaagaggcaaaaggaggaaactgag
gaggaagatggtgactctattgagaaggtgctctggtatcagccaaagggaatggctgaa
gaagctgtacggaacaacaaatcaacagagcctctattgttgagtcatttattccactca
gaaccagattggaatgagactgaattttttatcaaatggaaaggccagtcacatttacat
tgtcaatggaaatcattttctgagttgcaaacattgagtggctttaagaaggttctgaat
tacaccaaaaaagtgatggaggatatcaagtacagaagaacagtctctcgtgaggagatt
gaggtcattgatgtgagtaaggagatggatttggatcttatcaagcagaattgtcaggtt
gagaggataattgcagatagaatcagcaaagacggttcgggaataccagagtatttggtt
aaatggcaaggactctcctatgctgaagcaacatgggagaagtttgttgatattgctttt
gcccaggcagcgattgatgaatataaggctcgtgaagttgccctgacagctgtacaggtt
aaattggtagacttccagcgaaggaagagtaaagcaagtttgagaaagctcgaggaacag
cctgagtggttaaaaggcggtaaacttagagattatcagcttgagggcctaaattttctt
gttaacagttggagaaatgatacaaatgttatactagctgatgaaatgggccttgggaag
actgttcagtcagtgtctatgcttggttttctgcagaatgctcaacaaattcatggccca
tttcttgttgttgtgcctctatcaactttgtcaaattgggctaaggaattcaggaagtgg
cttcctgagatgaacgtgatcatatatgttggaactcgtgcaagccgagaggtttgtcag
cagtatgaatttttctctgataagaagactggcaagggtacaaaatttgatgctctgttg
actacatatgaagttttattgaaggataagactgtgctttcaaaaattaagtggaactat
cttatggttgatgaagcacatagattaaagaacagtgaagcttcattgtatacaacactt
aaggaattcagcaccaaaaacaagcttcttattactggaactcccctgcagaacagcgtg
gaagaactatgggccttgcttcactttcttgattcggataagttcaagagcaaggatgag
tttgttcagaattacaagaaccttggctcgtttaacgaaattgagcttgctaatcttcat
atggagttgaggccacacattctcagaagagtcattaaggatgtggagaagtctttgccc
ccaaagattgaacgagttctcagggttgagatgtctcctctacagaaacagtattacaag
tggattttggaacgcaactttcacgacttgaacaaaggtgtacgtggaaatcaggtttcc
cttttgaacattgtggttgagttgaagaaatgttgcaatcatccattcctctttgagagt
gcagaccatggttatggtggagactctagtactacaggcagcagtaaactggaaaggatc
attcttagcagtggaaagcttgttatccttgacaagcttcttgacagattgcatgagacg
aaacaccgggttttaatattttcacagatggtcaggatgttggacatcctggcagaatac
ttgtcattcaaagggttcaagtatcagaggcttgatgggagtacaaaagctgaggtgcgc
caccaggctatggaccatttcaatgcacctggtagtgatgatttctgtttccttctttcc
actcgtgctggtggtttaggtatcaatcttgctacagcagatactgtcatcatatttgat
tcagactggaatcctcaaaatgatctgcaggcaatgagcagagctcatcggattggtcaa
caagaagttgttaatatttatagattcgtgacaagcaaaagtgttgaggaagacatcttg
gaacgtgctaaaaagaaaatggtacttgaccatttggtcattcagaagctaaatgctgag
ggaagactggagaagaaagaagctaaaaaagctagtacatttgacaagaatgagctatca
gctattttgaggtttggagcagaggaattgtttaaagaagagaaaaatgatgaagaaaac
aaaaagaggcttttaagcatggacattgatgaaattcttgaaagagcagagaaggtcgaa
cagaagggacccgaggaagaacaagggcatgaattactgagtgcatttaaggttgctaat
ttttgctctgctgaagatgatggaagtttttggagtcgatggataaaacctgatgcagtt
tcgcaggctgaggaagctttagcccctcgagctgcaagaagcagcaagagttatgctgag
gccatcccatctgaaagggtcaacatgaggaaaaagaagggtgttgaatctcaggacaga
gccataaagcgccgaaatgctgactattctggttatttgcccccaccacttgagggagct
tctgcacaagtaagagggtggtcatatgggagcttgcctaagagagatgctactcgtttt
ttccgtgcggtcaagaagtttggtaatgatagccaaattagcttaattgcagctgaagtg
ggtgggtctgttgaagctgctcctgtagaagctcaaattgagctctttgattcattgata
gagggttgcagagaagctgttaatgtaggaagcctagacccaaagggacctctgttggat
ttttttggtgttccagtgaaggctgatgatctgttaagccgtgttgaagaacttcagctt
ctgtcgaagcgcattagccgctacaatgatccaatctcacagtttcaggctttgatgtac
cttaaacctgcaacttggtctaaaggttgtgggtggaaccagaaggatgatgcaagattg
ctattggggattcactatcatggatttggaaactgggaaaagattagattagatgaaaaa
cttggccttttgaaaaagattgctccggtggaacttcagcatcatgaaactttcctacca
cgagctccgcagttaaaagaaagagcttctcaacttcttgaaatggaacttgttgctgtt
ggtgggaagatttcaggggccaaaggtggtcgaaagggttctaaaaagcagaaagaccat
cttcttcccaacatcccagttgctcaaaacaaaggcggcagacaatggaaagggggatct
cccgacctcctaaaagtcccaaggagtaggttgaagtcaacacgtgcccagaagaagaac
gaacctttggttaaagaggaaggcgagatgtcagatacggaagaagtgtatgaacagttc
aaggaagtgaaatggatggaatggtgtgaagatgtcctgattgaggaaagaaagacactc
gagcgtcttcacaggttgcaaactactagtgctgatcttcctaaagaaaaggtgctttca
agaattagaaactatctgcagcttcttgggcgaaggattgatcaaattgttattgaccat
gaggaggatccatgtaaacaagaaaggatgacaacccgactctggaactatgtctccaca
ttctcaaatttgtcaggaggcaaacttcaccagatctattcgaaactgaaacaggaggga
agttcttcccacataaacacgagaggtgagagtcgaatacttaacaagggtggtcttgac
acagcaaaattcgaagcatggaaaaggaggcggcgatctgaaggggagttccatagacct
tccaataatggtaatggtacggttatacctgatccaagttcaggtattcttggtccaccg
ccatctgattcaaaccggcagcgccaccaccctggttttggtccaagaccgggtgtcaag
tag
DBGET
integrated database retrieval system
