Cynara cardunculus var. scolymus (artichoke): 112521713
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Entry
112521713 CDS
T05604
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Module
ccav_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112521713
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
112521713
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
112521713
NCBI-ProteinID:
XP_024986477
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Position
LG 11:complement(9307518..9314921)
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AA seq
377 aa
AA seq
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MSQWHSREIARPFDLVLVFQTESHIQDFRMVVFLSIFCISFGLKTANATSFDVTLYGAKG
DGKTDDSDLLGNITAPKTIEGWKGCDTSGQLLLFGSVQGLTAYGPGQFDGYGSIWWPRSA
RLDGPSCNCPSMLRFQNCNGLRLSGTTHINSPKSHIHINGCQDVQIGNLRILAPEDSANT
DGIDISQSSHVLIYHSIIGTGDDCVAIGDGTYDIHVNGISCGPGHGISVGSLGRDGSFAA
VEQVYVKNCSIYGTQNGLRIKTVPFGKGYARGIIYEDIRLHNVGNPIIIDQHYCLNTENH
YCPAPSKADAVQVSNVTYININGTSATKQAITFDCSEKVKCTEINTNRVRITGEDVVAYC
KNTQGNFIKTTPYIACN
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagtggcattcaagagagattgctagaccttttgatctagtccttgtttttcaa
accgaaagccatattcaggattttcgaatggtggtgtttttaagcattttctgcatttca
tttggtctgaaaaccgcaaatgcaaccagttttgacgtaacattgtacggtgcaaagggt
gacgggaagacagacgattccgatcttttgggcaacattactgcacccaagactatcgaa
ggatggaaaggttgtgatacgagcggccagctgttactttttggatcggtacaaggactc
accgcatatggacctggccaatttgatggctatggttccatctggtggccgagaagtgca
cgcttggatggtccgtcctgtaattgcccatcgatgttacgttttcagaactgtaacggg
cttcgactgagtggtacaacacatataaacagtccaaagagccatattcacatcaatggt
tgtcaagatgtacaaattggaaatcttcgaattttagcacctgaagacagtgcgaatact
gatggaatcgacatcagtcaatcgtcacatgttcttatatatcactctataattggaacc
ggtgatgattgtgtagctattggcgatggcacttacgatatccatgtgaacgggatctct
tgtgggcctggtcatggcataagcgtcggaagccttgggagggacggtagttttgcggcg
gtggaacaagtatatgtaaaaaattgtagcatctatggaacgcaaaacgggttacgaatc
aagactgtgccctttggaaaagggtatgctcgggggatcatatatgaggacattcgtctc
cacaatgttggaaatccaattataatcgatcaacattactgccttaacacagagaatcat
tattgccctgcaccatcaaaggcagatgcagtacaagtgagcaatgtaacgtatataaac
ataaatgggacttcggcgacgaaacaagcaattacttttgattgtagcgagaaggttaag
tgtactgagatcaacaccaacagagtccgaatcactggagaagatgttgttgcttactgc
aaaaatactcaaggaaattttatcaaaacgaccccttatattgcttgcaattag
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