Cynara cardunculus var. scolymus (artichoke): 112521718
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Entry
112521718 CDS
T05604
Name
(RefSeq) phytochrome B-like
KO
K12121
phytochrome B
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
112521718
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_9
PAS_4
PAS_8
PAS_3
Motif
Other DBs
NCBI-GeneID:
112521718
NCBI-ProteinID:
XP_024986483
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All DBs
Position
LG 11:9640771..9647477
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AA seq
1128 aa
AA seq
DB search
MASDGKTSSKFHPVSKGRPSSTSNSNRRMDSMSKATAQYTVDARLHAVFEQSGGSGKSFD
YSQSLKTTTQSIPEQQITAYLSRIQRGGHIQPFGCMIAIDDSTFKVIAFSENARERLGLA
PQSVPSIEKPEILTIGTDVKTLFTPSSSSLLERAFRAREITLLNPVWVHSRNSGKPFYAI
LHRIDVGIVIDLEPARMEDPALSIAGAVQSQKLAVRAISNLQALPGGDVKLLCDTVVQNV
RELTGYDRVMVYKFHEDEHGEVVAESRREDLDPYIGLHYPATDIPQASRFLFRQNRVRMI
VDCHTTPVRVIQDDALMQPLSLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGLDDEN
VGGRASMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHILRT
QTLLCDMLLRDSPTGIVTQTPSIMDLVKCDGAALYNQGKYYPLGVTPTESQIKDIVEWLS
ACHRDSTGLSTDSLADAGYPGVASLGDAVCGMAVAYITSNDILFWFRSNTAKEIKWGGAK
HHPEDKDDGQRMHPRSSFNAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDVEENNNS
KAVVKAQSEDMDLQGVDELSSVAREMVRLIETATAPIFAVDVGGRINGWNAKVAELTGLS
VEKAVGKSLVQDLVYEEAEETVAKLLYRALRGEEDKNVEIKLRTFNSAMEETPVFLVVNA
CSSRDYTDNIVGVCFVGQDVTGQKVVMDKFIQIQGDYKAIIHSPSALIPPIFASDENTCC
SEWNTAMEKLTGWSRGDIIGKMLVGEIFGSFCRLKGPDSLTKFMIILHNAIGGQDTDKYP
FSFFDKNGKFVQVLLTANKRLNMAGKVIGAFCFLQIASLELQQVLKLQMQQEKKCYARMK
ELTYICHEIKNPLRGIRFANSLLEASDLNEDQKQLLETCAACEKQMFKIIKDVDKENIEE
GSLELEKHEFLLGSVIDVVVSQVMLLVRDRGVQLIRDIPEEVKTLTVYGDQARVQQVLTN
FLLNMVRHSPSPGGWVEIQFRPSLKQTSDGKNVVHVAFRIMSPGEGLPPELVQDMFNSSQ
WSSEEGLGLSMCRKILTLMNGEVQYIRESERCYFFVVLELPPRSKTVD
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgatggtaaaacgagctcaaaatttcatcccgttagcaaaggtcgaccatca
tcaacatcaaacagcaacaggaggatggattcaatgagcaaagccactgcacaatataca
gttgatgcaaggttacatgccgtttttgaacaatctggtggttctggtaagtcttttgat
tactcgcaatcactcaaaaccacaacccaatccatccctgaacaacaaattactgcttat
ttgtcgagaattcaaagaggaggtcacattcaaccctttggttgcatgattgcaatcgat
gattccacttttaaagtcatcgcgtttagcgaaaatgctcgagaacgattaggtttggct
ccacaatctgttccgagcatcgaaaaacccgaaatcttaaccattggaaccgacgtcaaa
acccttttcaccccttccagttcttcgttgctggaaagggcttttcgagctcgagaaatc
acgcttctcaaccctgtttgggttcactcgaggaattcggggaaacccttttacgcgatt
ttgcataggattgatgtaggtattgttattgatttggagcccgcaagaatggaagatccg
gcgttgtcaatagccggcgccgtacagtctcagaagctcgccgttcgggcgatttccaac
ttgcaggcactccccggcggtgatgttaagcttttgtgtgacacggtggtgcagaatgtg
agggagctcacgggttacgatcgggttatggtgtataaatttcatgaagatgagcatggt
gaagttgtggctgaaagcagaagggaagatttagatccttatattggtttacattatccg
gccacggacatccctcaagcttcgagatttttgttccggcaaaaccgtgttcggatgatt
gtcgactgtcatacgaccccggttcgtgtgatccaagacgacgccttgatgcaaccactg
agcttggtgggttcaacccttcgagcccctcacggttgccatgctcagtatatggctaac
atgggctcgatcgcttcattagctatggcggttatcatcaatggattggatgatgaaaat
gtaggcggtcgagcttcgatgagactatgggggttagttgtttgtcatcatacatccgct
cgatgcattcctttccctcttcgttatgcttgtgaattcttgatgcaagcattcgggctc
caactaaatatggaactacaattagcatctcaaatgtccgaaaaacacattttaagaaca
cagactttattgtgcgatatgcttcttcgcgattcgccaacgggtattgtgactcaaact
ccgagcatcatggatctcgtgaaatgcgatggggccgcgctttacaatcaaggaaaatac
tacccattaggtgtcacaccaaccgaatcccaaatcaaagatatcgtggaatggctatca
gcatgccatcgagattcaaccggtttgagcaccgatagtttggccgatgccggttatcca
ggagtcgcttcactcggggatgcggtttgcgggatggcggtggcttatattacttccaac
gatatcttattttggtttcgatcgaatacagcaaaagagatcaaatggggtggagctaag
catcatccagaagataaagacgatgggcaaagaatgcatccacgatcatcgtttaatgcg
tttttagaagtggtgaaaagcaggagtttgccatgggagaatgcagaaatggatgcgatt
cattctttacagcttattttgcgagattcgtttaaagacgttgaggaaaataacaattca
aaggctgttgtgaaagctcagagtgaagatatggatttgcaaggtgtggatgaacttagt
tcggttgctcgagaaatggttcggttgatcgagacggcaactgcgccgatatttgcggtt
gatgttggcggacgaataaacggatggaatgcaaaggttgcggaattgacgggtttgtcg
gtcgagaaagcggtcgggaaatcgttggttcaagatcttgtctatgaggaagccgaagaa
accgttgccaaacttttgtatcgcgccttaagaggtgaagaagataaaaatgtggagatc
aaactgaggacattcaattcagcaatggaagaaactccagtttttctggtggttaacgct
tgttctagccgggactacaccgataacatagtcggagtttgtttcgttggtcaagatgtt
accggacaaaaggtcgtaatggacaaattcatccaaattcaaggtgattacaaggccatt
attcatagcccgagcgctctaatccccccgatctttgcatccgatgagaacacctgttgc
tctgagtggaacacggccatggagaagctcacgggatggagccgaggagacatcatcggg
aaaatgttggtgggcgagattttcggaagtttttgtcgtctcaagggtcccgattcgttg
acaaaatttatgatcattttacataatgcaataggaggccaagacacggataaataccct
ttttcgttctttgacaaaaacgggaaatttgtgcaagttctattgaccgcaaataaaagg
ctgaatatggctggaaaagttatcggagctttctgcttcttgcaaatcgcgagtctggag
ttgcaacaagttctgaaactacaaatgcaacaggaaaagaaatgttacgcaaggatgaag
gagttgacgtatatttgtcacgagatcaagaatccgttgcgtggcatccgttttgcgaat
tctcttttggaagcatctgatttaaacgaagatcagaagcaattgcttgagacttgtgct
gcttgcgagaaacaaatgttcaagatcataaaggacgtcgataaggaaaacatcgaagaa
gggtctttggagctcgagaaacatgaatttctgctagggagtgtgatcgatgttgtagtg
agccaagtaatgttactggtgcgggatcgaggtgtgcaactgatccgtgatataccggag
gaagtcaagacgctgactgtttacggtgatcaagctagggttcaacaggtcttgaccaac
ttcttgttgaatatggtgcgccattcgccatcacccggtggttgggtggaaattcagttt
cgtccgagcctcaaacagacttcagatggaaagaatgtcgtgcatgttgcatttaggatc
atgtctcctggtgaaggtcttccaccggaactggttcaggacatgtttaatagcagccag
tggtcgagtgaagaaggtttagggctaagtatgtgtcgcaaaattctaactcttatgaat
ggtgaggtccaatatatcagagaatcagaaagatgttatttcttcgtcgttcttgaactt
cctccccgatcaaaaactgttgactag
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