Cynara cardunculus var. scolymus (artichoke): 112521784
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Entry
112521784 CDS
T05604
Name
(RefSeq) novel plant SNARE 11-like
KO
K08494
novel plant SNARE
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112521784
Membrane trafficking [BR:
ccav04131
]
SNARE
SNAP-25[N] (Qb)
NPSN
112521784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec20
V-SNARE_C
Prominin
DUF1759
ANIS5_cation-bd
Vps53_N
MCPsignal
CYP38_PsbQ-like
IKBKB_SDD
TMPIT
Helo_like_N
DUF2203
Occludin_ELL
RHA1_ro05818_N
Syntaxin_2
Phasin
DUF948
DUF641
Motif
Other DBs
NCBI-GeneID:
112521784
NCBI-ProteinID:
XP_024986547
LinkDB
All DBs
Position
LG 11:16736206..16741644
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AA seq
263 aa
AA seq
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MASSISSISEDLGELDGRITDVFRALSNGFQKLEKIKDSGRQSRQLEELTDKMRECKRLI
KEFEREVKDLDYTSIPHASRMLNERKQSMVKELNSYVELKKKYASNIERKRVGHIEGTEE
VSAEDNGLLASSMTNQELVGHGNQMMDETDQAIERSKKVVHDTVNVGSQTAATLKGQTEQ
MNRIIDDLDSIHFSIKKASRLVKELGKQIATDRCIMSMLFLIVIGVIAIIIVKVMHPENQ
DIQDLPGLAPPATSRKLLWFHTM
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcgatatcttccataagcgaggaccttggagagcttgacggacggattact
gacgtatttcgagctctctcaaatggatttcaaaagctggagaagatcaaagactcaggt
aggcagagtaggcagttggaggagcttaccgataagatgcgtgaatgcaagaggcttatt
aaagagttcgagagagaagttaaagatttagactatacaagcattcctcatgctagcagg
atgctgaatgagagaaagcaatcaatggtcaaggagttgaattcttatgttgaactgaaa
aagaaatatgcaagcaacattgaaagaaaaagagttgggcatattgaggggactgaagaa
gtatctgcagaagataatggcttgctagcctcatctatgacaaaccaggaactagtgggc
catggtaatcaaatgatggatgagaccgatcaagccatagaacgatcgaagaaggttgtc
cacgacacagtaaatgtcggaagtcagaccgcagcaacactcaaaggacagacagaacaa
atgaacagaatcatcgatgatcttgattcgatccatttttcaatcaagaaggcttccaga
ttggtgaaggaacttggcaagcagattgcaaccgatcgctgtattatgtccatgctcttt
cttattgtgattggtgtcatagcgatcattattgtgaaggtcatgcatccagaaaaccaa
gatatacaggaccttcctgggctagcccctcctgctactagtcgaaaactcctctggttt
cataccatgtaa
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