Cynara cardunculus var. scolymus (artichoke): 112521983
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Entry
112521983 CDS
T05604
Name
(RefSeq) syndetin-like
KO
K23288
syndetin
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112521983
Membrane trafficking [BR:
ccav04131
]
Protein recycling
Others
EARP complex
112521983
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
112521983
NCBI-ProteinID:
XP_024986780
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All DBs
Position
LG 11:complement(3477474..3498501)
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AA seq
1144 aa
AA seq
DB search
MQPSNFPASPLALIPIAFNHVNVSPVGFELSRVWLLGSLLFSQGGAVDSGGEMDLSKVGE
KFLSSVRSARSISLLPSTSERPEIPARAATAATIARALASIPPHHRQSLSSSSEELSSIY
GSTSRGQVVEELEEEFYEEMFDPVRHTLENLPSEENELTYFEGKAALRLLQLDKVTENLS
RQVMEHHEVMVKGMHLVKELEKDMKVANVICMNGRRHLTSSRNEVSRDLIVNRNSRRKQA
LLDILPVLAELRHAHDMQVEIEIHVDEGNFFKAFQVLSEYLQLLDGFSELLVIQEMSRGV
EIWLGKALQKLDSLLLGVCRDFKETSFITVVDAYALIGDVSGLAEKIQSFFMQEVISETH
AVLKNIVLEDLEAAEIQSTRLTYSDLCTRVPESKFRECLLATLAVLFDLMCSYHAIMNFN
SDNKVPLDRLSPAMQEGYEGTGSSEDVQHADPSSQNCSSLKADDGSLSEPSGQVPNLASS
EEPTTSATTLSDANGINNITHDPSGSESRDDGTGASSSGSSWFQLRNDATTFVSQTLQRG
RRNLWQLTASRVSVLLSSDAVGSTSIHQFLKNYEDLNTFILAGESFCGADAVEFRMRVKA
ICECYYTSFHRQNIYALKMVLEKESWFTMPQETIQVVSFAGLVGDGAALILQSATSSTSR
ELQSQKSADLVKVKTIPNQSGFSHWISSGNPFDPKIASKEFDDFSPRAASAVSEEPNENF
NEASHKNNSSLNSDANHSNGHVDLEDENEDLHADFIDEDSQLPSRISKPNRSRNHSSPWS
DEEMEAHTGSSICVLRLMDKYARLMQRLDIVNVEFFKGICQFFGIFFHFVFESFGQQNTN
PGGKGLNDALGYRLKTALSRIRRDCDQWVKSPSSSSSSSTSLNMPLPHTDAAPNGIPNSN
LCHVPNTSFGLKERCAGADTITLVARLLHKSKAHLQSILPKNNAAIIEDFYVHLVSSVPD
LVEQIHRTTARLLLHISGYADRIANAKWEVKELGMEHNGYVDLLLGEFKHYKTRLAHGGI
QQEVQDKLIGYGLENLSETIVEGLSRVKRCTDEGRALMSLDFQVLITGLQHFLIINVKPK
LQRVETFIKAFYLPETEYVHWACAHPEYTKSQMMGLINLVATMKGWKRKTKSEVLEKIEA
ACGF
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaagtaattttccagcatcacctttggcgttgattccaattgctttcaatcat
gtcaatgtgagtcctgtgggtttcgagctttccagggtttggttattgggttcgcttctc
ttctctcaaggaggtgccgttgatagcggtggtgagatggatttgtcaaaggttggtgag
aaatttctcagttcagtccgctccgcgagatccatcagtcttctcccttctacgtccgaa
cgccccgagattccagcacgggctgcaactgcagcaactattgctcgtgcacttgcttca
atccctccacatcataggcaaagtctctcttcaagttctgaagaactgagttcaatatat
ggaagcacatcccgtggccaagtagtggaggagcttgaagaagaattttatgaagagatg
tttgaccccgttcggcacactttagagaatcttccatctgaagaaaatgagctcacgtat
ttcgaagggaaggctgctcttaggttattacagctggataaagtaacggaaaatctgtcg
cgccaagtgatggagcaccatgaagtaatggtgaaagggatgcatttagtaaaagagttg
gagaaagacatgaaggttgcaaatgtcatatgcatgaatggacggagacatttaacttct
tcaaggaatgaggtgtcaagggatcttattgttaacagaaattctagaaggaagcaagct
cttctggacatactcccagttttagcagagcttcgtcatgcacatgacatgcaagtagaa
attgaaatccatgtcgacgaagggaacttctttaaggcattccaggtgttgtctgagtat
cttcagcttctggatggtttctcagagcttttagtcatacaagagatgagtcgtggtgtg
gagatctggctgggaaaagctctacagaaattggattcacttctattgggagtgtgcaga
gacttcaaagaaacaagcttcataacagtggttgatgcttatgcattgattggtgatgtt
tctggtcttgctgaaaagatacaaagcttctttatgcaggaagttatatctgaaacccat
gcggtactgaagaatattgtgctggaggatctagaagctgctgaaattcaaagcaccagg
cttacatatagtgatctatgcacacgggtacctgaatccaagtttagggagtgtttgttg
gcaacactagctgtcctcttcgacttgatgtgctcgtatcatgcaatcatgaatttcaat
tcggataataaggttccgttggaccgtttatcacctgctatgcaggaaggatatgaaggg
actggttcttctgaggatgtccaacatgctgatccatcatcacaaaactgttctagtctc
aaggcagatgatggttctctctctgaaccgtcgggccaagtgcccaatttagcttcgtcg
gaggagcctacaacatctgccaccaccttatctgacgctaatggaatcaacaacatcacg
catgatccttctggttcagaatcgagggatgatgggactggagcttcaagcagtggatcc
tcttggtttcaactccggaatgatgccaccacatttgtttcacaaacattacagaggggt
cgcaggaatctttggcaacttacagcgagccgtgtgtcagtattgctttcttccgatgca
gttggttctactagcattcatcagtttttgaaaaattatgaagatctcaataccttcatc
ttagccggtgaatctttctgtggggctgatgctgttgaatttagaatgagagtgaaagct
atttgtgaatgttactatacatcttttcaccggcaaaatatatatgctctaaaaatggtt
ttggaaaaagagagttggttcacgatgccgcaagagacaatccaggtagttagttttgca
ggccttgttggtgatggagctgcgttaattcttcaatctgctacctcctccacttcaaga
gagttgcagtcccaaaaatcagcagatttggtgaaagtgaaaactatccccaatcagagt
gggttttcccactggattagtagtggaaatccatttgatccaaaaattgcttccaaggag
tttgatgatttttctccacgtgctgcatcagcagtctcagaagaacccaatgaaaatttt
aatgaggcatctcacaagaacaattcatcacttaacagtgatgcaaaccatagcaatggc
cacgttgatcttgaagatgaaaatgaagatctccatgcagattttattgatgaggacagc
caactacctagccggatttcaaagcccaaccgttcaagaaatcactcttcaccatggagt
gacgaagagatggaagcacacacaggatcttcaatatgtgtcctaaggctgatggataaa
tatgcaaggttaatgcaaagattagacatagtcaatgttgagttttttaaggggatatgc
cagttttttgggatattctttcattttgtttttgaaagctttgggcagcagaacaccaat
cctggtggtaaaggattaaatgatgctcttggttatcggctgaaaacagccttatccaga
atacggagagattgtgatcagtgggtaaaatccccatcttcttcatcctcttcgtctacg
tctttgaatatgccattgcctcatactgacgctgcgcctaatggtatacccaattcgaat
ctttgtcatgtgcccaacacctcttttggcctcaaggaaagatgtgcaggagctgacacc
ataactcttgttgctcgattattgcataaatctaaggcccatcttcaatcaattcttccg
aagaataatgcagcaattattgaagacttctatgtgcatttggtcagttcagtgccagat
cttgtagagcaaattcatagaacaaccgcaagattacttcttcacattagcgggtatgct
gatcgaattgccaatgctaaatgggaagttaaagagcttggaatggaacataatgggtat
gttgatctattgttgggagaatttaagcactacaagacgaggcttgctcatggaggcatt
cagcaggaggttcaagataaactaatagggtatggacttgaaaatctttccgaaaccatc
gttgaaggcctatcgcgagtgaagaggtgcactgacgagggacgagctcttatgtcattg
gattttcaggttttaatcactggccttcagcattttctcatcatcaatgtgaagccgaaa
ttacaaagagttgaaacttttatcaaggcattttatcttccggaaactgaatatgtgcat
tgggcttgtgctcatccggaatacacgaaaagccaaatgatggggctaatcaaccttgtg
gccaccatgaaaggttggaaaaggaaaaccaaatctgaagtgctagaaaaaatagaagca
gcatgtggcttctag
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